Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6241 and GFF6242 are separated by 132 nucleotides GFF6242 and GFF6243 are separated by 15 nucleotides
GFF6241 - Transglutaminase-like domain, at 33,815 to 34,636
GFF6241
GFF6242 - ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD, at 34,769 to 37,306
GFF6242
GFF6243 - Ku domain protein, at 37,322 to 38,293
GFF6243
Position (kb) 34
35
36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 33.875 kb on + strand at 33.875 kb on + strand at 33.876 kb on - strand at 33.876 kb on - strand at 33.876 kb on - strand at 34.052 kb on + strand, within GFF6241 at 34.052 kb on + strand, within GFF6241 at 34.052 kb on + strand, within GFF6241 at 34.404 kb on - strand, within GFF6241 at 34.469 kb on + strand, within GFF6241 at 34.469 kb on + strand, within GFF6241 at 34.469 kb on + strand, within GFF6241 at 34.470 kb on - strand, within GFF6241 at 34.634 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.693 kb on + strand at 34.694 kb on - strand at 34.694 kb on - strand at 34.765 kb on + strand at 34.765 kb on + strand at 34.765 kb on + strand at 34.770 kb on + strand at 34.771 kb on - strand at 35.134 kb on - strand, within GFF6242 at 35.571 kb on + strand, within GFF6242 at 35.572 kb on - strand, within GFF6242 at 35.575 kb on - strand, within GFF6242 at 35.967 kb on + strand, within GFF6242 at 36.048 kb on + strand, within GFF6242 at 36.049 kb on - strand, within GFF6242 at 36.120 kb on + strand, within GFF6242 at 36.308 kb on + strand, within GFF6242 at 36.333 kb on + strand, within GFF6242 at 36.577 kb on - strand, within GFF6242 at 36.677 kb on + strand, within GFF6242 at 36.677 kb on + strand, within GFF6242 at 36.677 kb on + strand, within GFF6242 at 36.678 kb on - strand, within GFF6242 at 36.678 kb on - strand, within GFF6242 at 36.678 kb on - strand, within GFF6242 at 36.781 kb on - strand, within GFF6242 at 36.999 kb on + strand, within GFF6242 at 37.000 kb on - strand, within GFF6242 at 37.035 kb on + strand, within GFF6242 at 37.152 kb on + strand at 37.903 kb on - strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.935 kb on + strand, within GFF6243 at 37.936 kb on - strand, within GFF6243 at 37.936 kb on - strand, within GFF6243 at 37.936 kb on - strand, within GFF6243 at 37.938 kb on + strand, within GFF6243 at 37.938 kb on + strand, within GFF6243 at 37.939 kb on - strand, within GFF6243 at 37.953 kb on + strand, within GFF6243 at 38.019 kb on + strand, within GFF6243 at 38.055 kb on + strand, within GFF6243 at 38.055 kb on + strand, within GFF6243 at 38.055 kb on + strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.056 kb on - strand, within GFF6243 at 38.071 kb on - strand, within GFF6243 at 38.103 kb on - strand, within GFF6243 at 38.103 kb on - strand, within GFF6243 at 38.136 kb on + strand, within GFF6243 at 38.136 kb on + strand, within GFF6243 at 38.136 kb on + strand, within GFF6243 at 38.205 kb on + strand at 38.205 kb on + strand at 38.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 33,875 + +0.5 33,875 + -1.5 33,876 - -1.7 33,876 - +1.1 33,876 - -0.4 34,052 + GFF6241 0.29 +0.5 34,052 + GFF6241 0.29 -0.2 34,052 + GFF6241 0.29 -0.4 34,404 - GFF6241 0.72 -0.1 34,469 + GFF6241 0.80 +0.0 34,469 + GFF6241 0.80 -0.3 34,469 + GFF6241 0.80 +0.7 34,470 - GFF6241 0.80 -2.3 34,634 + -1.6 34,693 + -0.2 34,693 + +0.5 34,693 + -0.7 34,694 - +0.5 34,694 - -0.3 34,765 + -0.2 34,765 + +1.6 34,765 + -0.1 34,770 + +0.4 34,771 - +0.2 35,134 - GFF6242 0.14 -0.1 35,571 + GFF6242 0.32 -1.2 35,572 - GFF6242 0.32 -0.2 35,575 - GFF6242 0.32 +0.4 35,967 + GFF6242 0.47 +0.4 36,048 + GFF6242 0.50 -0.2 36,049 - GFF6242 0.50 -0.1 36,120 + GFF6242 0.53 -0.9 36,308 + GFF6242 0.61 -0.0 36,333 + GFF6242 0.62 +0.4 36,577 - GFF6242 0.71 -0.1 36,677 + GFF6242 0.75 +0.1 36,677 + GFF6242 0.75 +0.3 36,677 + GFF6242 0.75 +0.9 36,678 - GFF6242 0.75 -1.3 36,678 - GFF6242 0.75 -0.1 36,678 - GFF6242 0.75 -0.5 36,781 - GFF6242 0.79 +0.4 36,999 + GFF6242 0.88 -0.2 37,000 - GFF6242 0.88 -1.0 37,035 + GFF6242 0.89 -0.2 37,152 + +0.2 37,903 - GFF6243 0.60 -0.5 37,935 + GFF6243 0.63 -2.0 37,935 + GFF6243 0.63 -1.4 37,935 + GFF6243 0.63 -1.0 37,935 + GFF6243 0.63 -0.9 37,935 + GFF6243 0.63 +1.4 37,935 + GFF6243 0.63 -0.1 37,935 + GFF6243 0.63 -0.3 37,935 + GFF6243 0.63 +1.3 37,935 + GFF6243 0.63 -0.3 37,936 - GFF6243 0.63 +0.5 37,936 - GFF6243 0.63 +0.0 37,936 - GFF6243 0.63 +1.2 37,938 + GFF6243 0.63 +1.7 37,938 + GFF6243 0.63 +0.8 37,939 - GFF6243 0.63 -0.4 37,953 + GFF6243 0.65 +0.8 38,019 + GFF6243 0.72 -0.1 38,055 + GFF6243 0.75 -0.2 38,055 + GFF6243 0.75 -1.1 38,055 + GFF6243 0.75 -0.5 38,056 - GFF6243 0.76 +0.1 38,056 - GFF6243 0.76 -0.9 38,056 - GFF6243 0.76 -1.1 38,056 - GFF6243 0.76 -0.8 38,071 - GFF6243 0.77 -0.7 38,103 - GFF6243 0.80 +0.2 38,103 - GFF6243 0.80 -1.1 38,136 + GFF6243 0.84 +0.5 38,136 + GFF6243 0.84 +0.2 38,136 + GFF6243 0.84 -0.6 38,205 + -0.7 38,205 + +0.2 38,206 - +0.1
Or see this region's nucleotide sequence