Strain Fitness in Variovorax sp. SCN45 around GFF6156

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6155 and GFF6156 are separated by 40 nucleotidesGFF6156 and GFF6157 are separated by 150 nucleotides GFF6155 - Aerobic carbon monoxide dehydrogenase (quinone), large chain (EC 1.2.5.3), at 59,718 to 62,108 GFF6155 GFF6156 - Aerobic carbon monoxide dehydrogenase (quinone), medium chain (EC 1.2.5.3), at 62,149 to 62,943 GFF6156 GFF6157 - Carbon monoxide oxidation accessory protein CoxD, at 63,094 to 63,996 GFF6157 Position (kb) 62 63Strain fitness (log2 ratio) -1 0 1at 61.368 kb on + strand, within GFF6155at 61.369 kb on - strand, within GFF6155at 61.560 kb on + strand, within GFF6155at 61.560 kb on + strand, within GFF6155at 61.575 kb on + strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.576 kb on - strand, within GFF6155at 61.620 kb on + strand, within GFF6155at 61.621 kb on - strand, within GFF6155at 61.621 kb on - strand, within GFF6155at 61.621 kb on - strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.656 kb on + strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.657 kb on - strand, within GFF6155at 61.821 kb on + strand, within GFF6155at 61.821 kb on + strand, within GFF6155at 61.821 kb on + strand, within GFF6155at 61.822 kb on - strand, within GFF6155at 61.822 kb on - strand, within GFF6155at 61.866 kb on + strand, within GFF6155at 61.866 kb on + strand, within GFF6155at 61.866 kb on + strand, within GFF6155at 61.867 kb on - strand, within GFF6155at 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.152 kb on + strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.153 kb on - strandat 62.544 kb on + strand, within GFF6156at 62.544 kb on + strand, within GFF6156at 62.544 kb on + strand, within GFF6156at 62.545 kb on - strand, within GFF6156at 62.659 kb on + strand, within GFF6156at 62.941 kb on + strandat 62.941 kb on + strandat 62.941 kb on + strandat 63.145 kb on + strandat 63.145 kb on + strandat 63.298 kb on + strand, within GFF6157at 63.298 kb on + strand, within GFF6157at 63.298 kb on + strand, within GFF6157at 63.299 kb on - strand, within GFF6157at 63.329 kb on - strand, within GFF6157at 63.329 kb on - strand, within GFF6157at 63.340 kb on + strand, within GFF6157at 63.341 kb on - strand, within GFF6157at 63.341 kb on - strand, within GFF6157at 63.341 kb on - strand, within GFF6157at 63.413 kb on - strand, within GFF6157at 63.424 kb on + strand, within GFF6157at 63.425 kb on - strand, within GFF6157at 63.425 kb on - strand, within GFF6157at 63.425 kb on - strand, within GFF6157at 63.539 kb on - strand, within GFF6157at 63.539 kb on - strand, within GFF6157at 63.539 kb on - strand, within GFF6157at 63.550 kb on + strand, within GFF6157at 63.551 kb on - strand, within GFF6157at 63.551 kb on - strand, within GFF6157at 63.664 kb on + strand, within GFF6157at 63.664 kb on + strand, within GFF6157at 63.664 kb on + strand, within GFF6157at 63.665 kb on - strand, within GFF6157at 63.680 kb on - strand, within GFF6157

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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61,368 + GFF6155 0.69 +0.1
61,369 - GFF6155 0.69 -0.1
61,560 + GFF6155 0.77 +0.1
61,560 + GFF6155 0.77 -0.4
61,575 + GFF6155 0.78 -0.3
61,576 - GFF6155 0.78 -0.2
61,576 - GFF6155 0.78 +1.3
61,576 - GFF6155 0.78 +0.0
61,576 - GFF6155 0.78 -0.4
61,576 - GFF6155 0.78 -0.3
61,576 - GFF6155 0.78 -1.0
61,620 + GFF6155 0.80 -0.1
61,621 - GFF6155 0.80 -1.6
61,621 - GFF6155 0.80 +0.3
61,621 - GFF6155 0.80 +0.3
61,656 + GFF6155 0.81 -0.2
61,656 + GFF6155 0.81 -0.2
61,656 + GFF6155 0.81 +0.8
61,656 + GFF6155 0.81 -1.5
61,656 + GFF6155 0.81 -0.0
61,657 - GFF6155 0.81 -0.8
61,657 - GFF6155 0.81 +0.8
61,657 - GFF6155 0.81 +0.3
61,657 - GFF6155 0.81 -0.0
61,821 + GFF6155 0.88 +0.1
61,821 + GFF6155 0.88 +1.1
61,821 + GFF6155 0.88 -0.2
61,822 - GFF6155 0.88 -0.7
61,822 - GFF6155 0.88 -0.5
61,866 + GFF6155 0.90 -1.0
61,866 + GFF6155 0.90 -0.0
61,866 + GFF6155 0.90 -1.2
61,867 - GFF6155 0.90 +0.1
62,152 + +0.3
62,152 + +0.3
62,152 + -1.0
62,152 + +1.1
62,152 + +0.4
62,152 + -0.7
62,152 + -0.1
62,152 + -0.1
62,153 - -0.4
62,153 - -0.3
62,153 - +1.5
62,153 - +0.6
62,153 - -0.4
62,153 - +0.2
62,153 - -0.8
62,153 - +1.5
62,153 - -0.6
62,153 - -1.1
62,153 - +0.1
62,153 - -0.4
62,544 + GFF6156 0.50 -0.8
62,544 + GFF6156 0.50 -1.1
62,544 + GFF6156 0.50 -0.7
62,545 - GFF6156 0.50 +0.5
62,659 + GFF6156 0.64 +0.6
62,941 + +0.0
62,941 + +0.2
62,941 + -0.1
63,145 + -0.2
63,145 + -0.1
63,298 + GFF6157 0.23 -0.1
63,298 + GFF6157 0.23 +0.1
63,298 + GFF6157 0.23 +0.7
63,299 - GFF6157 0.23 -0.2
63,329 - GFF6157 0.26 -1.2
63,329 - GFF6157 0.26 +0.4
63,340 + GFF6157 0.27 +0.8
63,341 - GFF6157 0.27 -0.1
63,341 - GFF6157 0.27 -0.2
63,341 - GFF6157 0.27 -1.2
63,413 - GFF6157 0.35 -0.6
63,424 + GFF6157 0.37 +0.8
63,425 - GFF6157 0.37 +0.5
63,425 - GFF6157 0.37 +0.1
63,425 - GFF6157 0.37 -0.3
63,539 - GFF6157 0.49 -0.7
63,539 - GFF6157 0.49 +0.5
63,539 - GFF6157 0.49 +0.2
63,550 + GFF6157 0.50 +0.5
63,551 - GFF6157 0.51 +0.8
63,551 - GFF6157 0.51 -0.2
63,664 + GFF6157 0.63 -0.5
63,664 + GFF6157 0.63 -0.5
63,664 + GFF6157 0.63 +0.6
63,665 - GFF6157 0.63 +0.1
63,680 - GFF6157 0.65 +0.5

Or see this region's nucleotide sequence