Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6010 and GFF6011 are separated by 6 nucleotides GFF6011 and GFF6012 are separated by 111 nucleotides GFF6012 and GFF6013 are separated by 90 nucleotides
GFF6010 - MmgE/PrpD family protein, at 69,791 to 71,152
GFF6010
GFF6011 - putative decarboxylase, at 71,159 to 71,866
GFF6011
GFF6012 - Tricarboxylate transport protein TctC, at 71,978 to 72,982
GFF6012
GFF6013 - Muconate cycloisomerase (EC 5.5.1.1), at 73,073 to 74,227
GFF6013
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2 at 71.057 kb on + strand at 71.057 kb on + strand at 71.058 kb on - strand at 71.122 kb on + strand at 71.463 kb on + strand, within GFF6011 at 71.497 kb on - strand, within GFF6011 at 71.522 kb on + strand, within GFF6011 at 71.523 kb on - strand, within GFF6011 at 71.731 kb on - strand, within GFF6011 at 71.873 kb on - strand at 71.998 kb on + strand at 71.998 kb on + strand at 71.998 kb on + strand at 71.999 kb on - strand at 72.075 kb on + strand at 72.178 kb on + strand, within GFF6012 at 72.489 kb on + strand, within GFF6012 at 72.873 kb on + strand, within GFF6012 at 73.237 kb on - strand, within GFF6013 at 73.243 kb on - strand, within GFF6013 at 73.620 kb on + strand, within GFF6013 at 73.620 kb on + strand, within GFF6013 at 73.620 kb on + strand, within GFF6013 at 73.621 kb on - strand, within GFF6013 at 73.621 kb on - strand, within GFF6013 at 73.834 kb on - strand, within GFF6013 at 73.947 kb on + strand, within GFF6013 at 73.980 kb on + strand, within GFF6013
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 71,057 + -0.0 71,057 + -0.5 71,058 - +0.4 71,122 + -0.6 71,463 + GFF6011 0.43 +0.2 71,497 - GFF6011 0.48 -0.4 71,522 + GFF6011 0.51 +0.4 71,523 - GFF6011 0.51 +0.2 71,731 - GFF6011 0.81 +0.7 71,873 - -0.9 71,998 + +2.4 71,998 + -0.1 71,998 + -0.0 71,999 - -0.8 72,075 + -0.6 72,178 + GFF6012 0.20 -0.4 72,489 + GFF6012 0.51 -0.6 72,873 + GFF6012 0.89 +0.2 73,237 - GFF6013 0.14 -1.8 73,243 - GFF6013 0.15 +0.3 73,620 + GFF6013 0.47 +0.3 73,620 + GFF6013 0.47 -1.4 73,620 + GFF6013 0.47 +0.6 73,621 - GFF6013 0.47 +0.6 73,621 - GFF6013 0.47 +0.6 73,834 - GFF6013 0.66 +0.2 73,947 + GFF6013 0.76 +0.4 73,980 + GFF6013 0.79 -0.1
Or see this region's nucleotide sequence