Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5942 and GFF5943 overlap by 4 nucleotides GFF5943 and GFF5944 are separated by 27 nucleotides GFF5944 and GFF5945 are separated by 24 nucleotides
GFF5942 - hypothetical protein, at 162,089 to 164,233
GFF5942
GFF5943 - hypothetical protein, at 164,230 to 165,393
GFF5943
GFF5944 - Adenylosuccinate lyase (EC 4.3.2.2), at 165,421 to 166,170
GFF5944
GFF5945 - Membrane-bound lytic murein transglycosylase A, at 166,195 to 167,796
GFF5945
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1 at 163.401 kb on + strand, within GFF5942 at 163.401 kb on + strand, within GFF5942 at 163.402 kb on - strand, within GFF5942 at 163.402 kb on - strand, within GFF5942 at 163.743 kb on + strand, within GFF5942 at 163.788 kb on + strand, within GFF5942 at 163.788 kb on + strand, within GFF5942 at 164.211 kb on + strand at 164.519 kb on + strand, within GFF5943 at 164.520 kb on - strand, within GFF5943 at 165.414 kb on + strand at 165.415 kb on - strand at 165.415 kb on - strand at 165.415 kb on - strand at 165.428 kb on + strand at 165.429 kb on - strand at 165.603 kb on - strand, within GFF5944 at 165.879 kb on - strand, within GFF5944 at 165.890 kb on + strand, within GFF5944 at 165.983 kb on + strand, within GFF5944 at 165.983 kb on + strand, within GFF5944 at 165.983 kb on + strand, within GFF5944 at 165.984 kb on - strand, within GFF5944 at 165.984 kb on - strand, within GFF5944 at 166.076 kb on + strand, within GFF5944 at 166.076 kb on + strand, within GFF5944
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 163,401 + GFF5942 0.61 -0.2 163,401 + GFF5942 0.61 +0.6 163,402 - GFF5942 0.61 +0.5 163,402 - GFF5942 0.61 -0.5 163,743 + GFF5942 0.77 -0.9 163,788 + GFF5942 0.79 +1.6 163,788 + GFF5942 0.79 +0.3 164,211 + +1.1 164,519 + GFF5943 0.25 +0.0 164,520 - GFF5943 0.25 +0.5 165,414 + +0.6 165,415 - -1.0 165,415 - +1.1 165,415 - +1.0 165,428 + +0.6 165,429 - +0.8 165,603 - GFF5944 0.24 -1.3 165,879 - GFF5944 0.61 +0.7 165,890 + GFF5944 0.63 -0.3 165,983 + GFF5944 0.75 +0.2 165,983 + GFF5944 0.75 +1.4 165,983 + GFF5944 0.75 +0.4 165,984 - GFF5944 0.75 +0.4 165,984 - GFF5944 0.75 -1.0 166,076 + GFF5944 0.87 +1.1 166,076 + GFF5944 0.87 -0.6
Or see this region's nucleotide sequence