Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5934 and GFF5935 are separated by 8 nucleotides GFF5935 and GFF5936 are separated by 25 nucleotides
GFF5934 - hypothetical protein, at 149,383 to 152,019
GFF5934
GFF5935 - VgrG protein, at 152,028 to 154,403
GFF5935
GFF5936 - T6SS AAA+ chaperone ClpV (TssH), at 154,429 to 157,158
GFF5936
Position (kb) 152
153
154
155 Strain fitness (log2 ratio) -1
0
1 at 151.313 kb on + strand, within GFF5934 at 151.433 kb on + strand, within GFF5934 at 151.433 kb on + strand, within GFF5934 at 151.433 kb on + strand, within GFF5934 at 151.433 kb on + strand, within GFF5934 at 151.434 kb on - strand, within GFF5934 at 152.242 kb on + strand at 152.578 kb on + strand, within GFF5935 at 152.578 kb on + strand, within GFF5935 at 152.578 kb on + strand, within GFF5935 at 152.579 kb on - strand, within GFF5935 at 152.770 kb on + strand, within GFF5935 at 152.987 kb on - strand, within GFF5935 at 153.433 kb on + strand, within GFF5935 at 153.434 kb on - strand, within GFF5935 at 153.886 kb on + strand, within GFF5935 at 153.886 kb on + strand, within GFF5935 at 153.886 kb on + strand, within GFF5935 at 153.886 kb on + strand, within GFF5935 at 153.887 kb on - strand, within GFF5935 at 153.887 kb on - strand, within GFF5935 at 154.132 kb on + strand, within GFF5935 at 154.133 kb on - strand, within GFF5935 at 154.629 kb on - strand at 154.728 kb on - strand, within GFF5936 at 155.156 kb on + strand, within GFF5936
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 151,313 + GFF5934 0.73 -0.3 151,433 + GFF5934 0.78 -1.2 151,433 + GFF5934 0.78 +1.1 151,433 + GFF5934 0.78 -0.8 151,433 + GFF5934 0.78 -0.2 151,434 - GFF5934 0.78 +0.0 152,242 + -0.4 152,578 + GFF5935 0.23 +0.4 152,578 + GFF5935 0.23 -0.0 152,578 + GFF5935 0.23 +0.6 152,579 - GFF5935 0.23 -0.3 152,770 + GFF5935 0.31 +0.5 152,987 - GFF5935 0.40 -0.1 153,433 + GFF5935 0.59 +1.0 153,434 - GFF5935 0.59 -0.1 153,886 + GFF5935 0.78 -0.0 153,886 + GFF5935 0.78 -0.0 153,886 + GFF5935 0.78 +0.1 153,886 + GFF5935 0.78 +1.5 153,887 - GFF5935 0.78 +0.4 153,887 - GFF5935 0.78 +0.3 154,132 + GFF5935 0.89 +0.1 154,133 - GFF5935 0.89 -0.4 154,629 - -0.7 154,728 - GFF5936 0.11 +0.3 155,156 + GFF5936 0.27 -0.7
Or see this region's nucleotide sequence