Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5856 and GFF5857 are separated by 109 nucleotides GFF5857 and GFF5858 overlap by 4 nucleotides GFF5858 and GFF5859 are separated by 119 nucleotides
GFF5856 - Outer membrane receptor proteins, likely involved in siderophore uptake, at 55,882 to 58,413
GFF5856
GFF5857 - Fe2+-dicitrate sensor, membrane component, at 58,523 to 59,509
GFF5857
GFF5858 - heme uptake regulator, at 59,506 to 60,033
GFF5858
GFF5859 - KEGG: nickel transport system substrate-binding protein, at 60,153 to 60,905
GFF5859
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.635 kb on + strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 57.636 kb on - strand, within GFF5856 at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.247 kb on + strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.248 kb on - strand at 58.548 kb on + strand at 58.548 kb on + strand at 58.549 kb on - strand at 58.549 kb on - strand at 58.549 kb on - strand at 58.734 kb on + strand, within GFF5857 at 58.734 kb on + strand, within GFF5857 at 58.734 kb on - strand, within GFF5857 at 58.735 kb on - strand, within GFF5857 at 58.735 kb on - strand, within GFF5857 at 58.735 kb on - strand, within GFF5857 at 58.921 kb on + strand, within GFF5857 at 58.921 kb on + strand, within GFF5857 at 58.921 kb on + strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 58.922 kb on - strand, within GFF5857 at 59.175 kb on + strand, within GFF5857 at 59.175 kb on + strand, within GFF5857 at 59.175 kb on + strand, within GFF5857 at 59.176 kb on - strand, within GFF5857 at 59.369 kb on + strand, within GFF5857 at 59.369 kb on + strand, within GFF5857 at 59.369 kb on + strand, within GFF5857 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.561 kb on + strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.562 kb on - strand, within GFF5858 at 59.612 kb on + strand, within GFF5858 at 59.612 kb on + strand, within GFF5858 at 59.613 kb on - strand, within GFF5858 at 59.613 kb on - strand, within GFF5858 at 59.771 kb on + strand, within GFF5858 at 59.771 kb on + strand, within GFF5858 at 59.771 kb on + strand, within GFF5858 at 59.772 kb on - strand, within GFF5858 at 59.772 kb on - strand, within GFF5858 at 59.772 kb on - strand, within GFF5858 at 59.837 kb on + strand, within GFF5858 at 59.838 kb on - strand, within GFF5858 at 59.929 kb on + strand, within GFF5858 at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.987 kb on + strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 59.988 kb on - strand at 60.093 kb on + strand at 60.118 kb on - strand at 60.118 kb on - strand at 60.508 kb on + strand, within GFF5859 at 60.508 kb on + strand, within GFF5859 at 60.508 kb on + strand, within GFF5859 at 60.508 kb on + strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859 at 60.509 kb on - strand, within GFF5859
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 57,635 + GFF5856 0.69 +0.3 57,635 + GFF5856 0.69 -0.2 57,635 + GFF5856 0.69 -0.9 57,635 + GFF5856 0.69 +1.8 57,635 + GFF5856 0.69 -0.0 57,635 + GFF5856 0.69 -0.4 57,635 + GFF5856 0.69 -0.4 57,635 + GFF5856 0.69 -0.4 57,635 + GFF5856 0.69 +0.2 57,635 + GFF5856 0.69 -0.2 57,635 + GFF5856 0.69 -0.3 57,635 + GFF5856 0.69 -0.2 57,636 - GFF5856 0.69 -0.3 57,636 - GFF5856 0.69 -1.1 57,636 - GFF5856 0.69 -0.9 57,636 - GFF5856 0.69 -0.0 57,636 - GFF5856 0.69 -0.1 57,636 - GFF5856 0.69 -0.6 57,636 - GFF5856 0.69 -0.3 57,636 - GFF5856 0.69 -1.0 57,636 - GFF5856 0.69 +2.6 57,636 - GFF5856 0.69 -0.9 58,247 + +0.3 58,247 + -0.4 58,247 + +2.1 58,247 + -0.4 58,247 + -0.9 58,247 + -1.4 58,247 + -0.3 58,247 + -1.4 58,247 + -1.3 58,247 + -0.4 58,247 + +0.4 58,247 + +0.1 58,247 + -0.3 58,248 - -0.1 58,248 - -0.6 58,248 - -0.7 58,248 - +1.5 58,248 - -0.4 58,248 - +0.3 58,248 - -1.5 58,248 - -0.6 58,248 - +0.0 58,248 - +1.1 58,248 - -0.3 58,248 - +0.9 58,248 - -0.9 58,248 - -1.0 58,248 - -0.9 58,248 - -0.5 58,248 - -0.6 58,248 - -1.0 58,248 - +0.6 58,548 + -0.4 58,548 + -0.4 58,549 - +0.6 58,549 - +0.4 58,549 - -0.6 58,734 + GFF5857 0.21 +0.1 58,734 + GFF5857 0.21 -0.7 58,734 - GFF5857 0.21 -0.4 58,735 - GFF5857 0.21 -0.1 58,735 - GFF5857 0.21 -0.5 58,735 - GFF5857 0.21 +2.1 58,921 + GFF5857 0.40 -0.3 58,921 + GFF5857 0.40 -0.8 58,921 + GFF5857 0.40 -1.2 58,922 - GFF5857 0.40 -1.4 58,922 - GFF5857 0.40 +4.0 58,922 - GFF5857 0.40 -0.9 58,922 - GFF5857 0.40 +0.1 58,922 - GFF5857 0.40 +0.4 58,922 - GFF5857 0.40 +1.0 58,922 - GFF5857 0.40 +0.3 58,922 - GFF5857 0.40 -0.8 58,922 - GFF5857 0.40 -0.2 59,175 + GFF5857 0.66 +0.3 59,175 + GFF5857 0.66 -0.6 59,175 + GFF5857 0.66 -0.8 59,176 - GFF5857 0.66 -0.7 59,369 + GFF5857 0.86 -0.3 59,369 + GFF5857 0.86 -0.0 59,369 + GFF5857 0.86 +1.4 59,561 + GFF5858 0.10 -0.4 59,561 + GFF5858 0.10 +1.7 59,561 + GFF5858 0.10 -0.7 59,561 + GFF5858 0.10 -0.7 59,561 + GFF5858 0.10 -0.5 59,561 + GFF5858 0.10 -0.7 59,561 + GFF5858 0.10 -0.7 59,561 + GFF5858 0.10 -0.2 59,561 + GFF5858 0.10 -0.5 59,561 + GFF5858 0.10 -0.3 59,562 - GFF5858 0.11 -0.9 59,562 - GFF5858 0.11 +0.4 59,562 - GFF5858 0.11 -0.9 59,562 - GFF5858 0.11 -0.6 59,562 - GFF5858 0.11 -1.5 59,562 - GFF5858 0.11 +0.1 59,562 - GFF5858 0.11 +1.1 59,612 + GFF5858 0.20 -0.1 59,612 + GFF5858 0.20 -0.2 59,613 - GFF5858 0.20 -0.4 59,613 - GFF5858 0.20 -1.1 59,771 + GFF5858 0.50 -0.4 59,771 + GFF5858 0.50 -0.1 59,771 + GFF5858 0.50 -0.0 59,772 - GFF5858 0.50 -0.4 59,772 - GFF5858 0.50 -0.7 59,772 - GFF5858 0.50 -1.3 59,837 + GFF5858 0.63 -0.6 59,838 - GFF5858 0.63 +0.0 59,929 + GFF5858 0.80 -0.2 59,987 + +0.1 59,987 + +0.8 59,987 + -0.5 59,987 + -1.3 59,987 + -1.1 59,987 + -0.1 59,987 + +0.0 59,987 + +1.5 59,987 + +2.6 59,987 + +0.6 59,987 + +0.7 59,987 + +0.0 59,988 - -0.2 59,988 - +0.5 59,988 - -0.2 59,988 - -0.5 59,988 - -0.9 59,988 - -0.3 59,988 - +0.0 59,988 - -0.5 60,093 + -0.2 60,118 - +0.1 60,118 - -0.4 60,508 + GFF5859 0.47 -0.7 60,508 + GFF5859 0.47 -0.6 60,508 + GFF5859 0.47 -0.7 60,508 + GFF5859 0.47 -2.0 60,509 - GFF5859 0.47 -0.2 60,509 - GFF5859 0.47 -0.8 60,509 - GFF5859 0.47 +0.6 60,509 - GFF5859 0.47 -0.2 60,509 - GFF5859 0.47 +1.1 60,509 - GFF5859 0.47 +0.7
Or see this region's nucleotide sequence