Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5764 and GFF5765 are separated by 100 nucleotides GFF5765 and GFF5766 overlap by 4 nucleotides GFF5766 and GFF5767 overlap by 4 nucleotides
GFF5764 - hypothetical protein, at 136,701 to 138,008
GFF5764
GFF5765 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 138,109 to 138,942
GFF5765
GFF5766 - Chemotaxis protein CheD, at 138,939 to 139,613
GFF5766
GFF5767 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 139,610 to 140,695
GFF5767
Position (kb) 138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 137.231 kb on - strand, within GFF5764 at 137.490 kb on + strand, within GFF5764 at 137.491 kb on - strand, within GFF5764 at 137.505 kb on + strand, within GFF5764 at 137.506 kb on - strand, within GFF5764 at 137.589 kb on + strand, within GFF5764 at 138.070 kb on + strand at 138.070 kb on + strand at 138.070 kb on + strand at 138.070 kb on + strand at 138.070 kb on + strand at 138.074 kb on + strand at 138.074 kb on + strand at 138.074 kb on + strand at 138.074 kb on + strand at 138.074 kb on + strand at 138.075 kb on - strand at 138.075 kb on - strand at 138.214 kb on + strand, within GFF5765 at 138.215 kb on - strand, within GFF5765 at 138.215 kb on - strand, within GFF5765 at 138.215 kb on - strand, within GFF5765 at 138.215 kb on - strand, within GFF5765 at 138.215 kb on - strand, within GFF5765 at 138.215 kb on - strand, within GFF5765 at 138.268 kb on + strand, within GFF5765 at 138.268 kb on + strand, within GFF5765 at 138.268 kb on + strand, within GFF5765 at 138.269 kb on - strand, within GFF5765 at 138.269 kb on - strand, within GFF5765 at 138.454 kb on + strand, within GFF5765 at 138.766 kb on + strand, within GFF5765 at 138.767 kb on - strand, within GFF5765 at 138.904 kb on + strand at 138.904 kb on + strand at 138.987 kb on + strand at 138.987 kb on + strand at 139.038 kb on + strand, within GFF5766 at 139.038 kb on + strand, within GFF5766 at 139.038 kb on + strand, within GFF5766 at 139.038 kb on + strand, within GFF5766 at 139.041 kb on + strand, within GFF5766 at 139.041 kb on + strand, within GFF5766 at 139.041 kb on + strand, within GFF5766 at 139.042 kb on - strand, within GFF5766 at 139.042 kb on - strand, within GFF5766 at 139.206 kb on + strand, within GFF5766 at 139.353 kb on + strand, within GFF5766 at 139.354 kb on - strand, within GFF5766 at 139.419 kb on + strand, within GFF5766 at 139.419 kb on + strand, within GFF5766 at 139.419 kb on + strand, within GFF5766 at 139.419 kb on + strand, within GFF5766 at 139.419 kb on + strand, within GFF5766 at 139.419 kb on + strand, within GFF5766 at 139.420 kb on - strand, within GFF5766 at 139.420 kb on - strand, within GFF5766 at 139.632 kb on + strand at 139.632 kb on + strand at 139.632 kb on + strand at 139.632 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 137,231 - GFF5764 0.41 -1.4 137,490 + GFF5764 0.60 -0.1 137,491 - GFF5764 0.60 +0.4 137,505 + GFF5764 0.61 -0.4 137,506 - GFF5764 0.62 -0.0 137,589 + GFF5764 0.68 +1.2 138,070 + +0.6 138,070 + +2.5 138,070 + -0.6 138,070 + -0.8 138,070 + -0.0 138,074 + -0.7 138,074 + -0.0 138,074 + -0.0 138,074 + +0.8 138,074 + -2.7 138,075 - +0.4 138,075 - -2.8 138,214 + GFF5765 0.13 +0.5 138,215 - GFF5765 0.13 +0.2 138,215 - GFF5765 0.13 -1.0 138,215 - GFF5765 0.13 -0.5 138,215 - GFF5765 0.13 +0.1 138,215 - GFF5765 0.13 -0.4 138,215 - GFF5765 0.13 -0.4 138,268 + GFF5765 0.19 -3.0 138,268 + GFF5765 0.19 -0.3 138,268 + GFF5765 0.19 +0.3 138,269 - GFF5765 0.19 -0.4 138,269 - GFF5765 0.19 +0.3 138,454 + GFF5765 0.41 -0.6 138,766 + GFF5765 0.79 -0.8 138,767 - GFF5765 0.79 -0.6 138,904 + -0.2 138,904 + +0.4 138,987 + +1.0 138,987 + +1.0 139,038 + GFF5766 0.15 +0.4 139,038 + GFF5766 0.15 +2.0 139,038 + GFF5766 0.15 -0.1 139,038 + GFF5766 0.15 -0.6 139,041 + GFF5766 0.15 -1.1 139,041 + GFF5766 0.15 +2.0 139,041 + GFF5766 0.15 +0.1 139,042 - GFF5766 0.15 +0.4 139,042 - GFF5766 0.15 +0.8 139,206 + GFF5766 0.40 +0.2 139,353 + GFF5766 0.61 -0.9 139,354 - GFF5766 0.61 -0.0 139,419 + GFF5766 0.71 -2.1 139,419 + GFF5766 0.71 +0.5 139,419 + GFF5766 0.71 +0.6 139,419 + GFF5766 0.71 -0.2 139,419 + GFF5766 0.71 +0.2 139,419 + GFF5766 0.71 +0.4 139,420 - GFF5766 0.71 -1.0 139,420 - GFF5766 0.71 -0.2 139,632 + +0.8 139,632 + -0.8 139,632 + -0.7 139,632 + +0.5
Or see this region's nucleotide sequence