Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5757 and GFF5758 overlap by 4 nucleotides GFF5758 and GFF5759 are separated by 306 nucleotides GFF5759 and GFF5760 overlap by 4 nucleotides GFF5760 and GFF5761 are separated by 66 nucleotides
GFF5757 - hypothetical protein, at 129,710 to 131,014
GFF5757
GFF5758 - Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB, at 131,011 to 131,310
GFF5758
GFF5759 - Flagellar transcriptional activator FlhD, at 131,617 to 132,021
GFF5759
GFF5760 - Flagellar transcriptional activator FlhC, at 132,018 to 132,605
GFF5760
GFF5761 - Flagellar motor rotation protein MotA, at 132,672 to 133,532
GFF5761
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.006 kb on + strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.007 kb on - strand at 131.056 kb on + strand, within GFF5758 at 131.056 kb on + strand, within GFF5758 at 131.057 kb on - strand, within GFF5758 at 131.057 kb on - strand, within GFF5758 at 131.057 kb on - strand, within GFF5758 at 131.098 kb on + strand, within GFF5758 at 131.098 kb on + strand, within GFF5758 at 131.098 kb on + strand, within GFF5758 at 131.099 kb on - strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.149 kb on + strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.150 kb on - strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.257 kb on + strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.258 kb on - strand, within GFF5758 at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.308 kb on + strand at 131.309 kb on - strand at 131.313 kb on + strand at 131.314 kb on - strand at 131.314 kb on - strand at 131.323 kb on + strand at 131.324 kb on - strand at 131.331 kb on + strand at 131.333 kb on + strand at 131.334 kb on - strand at 131.335 kb on + strand at 131.335 kb on + strand at 131.335 kb on + strand at 131.336 kb on - strand at 131.336 kb on - strand at 131.336 kb on - strand at 131.370 kb on - strand at 131.370 kb on - strand at 131.412 kb on - strand at 131.493 kb on + strand at 131.493 kb on + strand at 131.493 kb on + strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.494 kb on - strand at 131.553 kb on - strand at 131.553 kb on - strand at 131.559 kb on + strand at 131.560 kb on - strand at 131.588 kb on - strand at 131.593 kb on - strand at 131.703 kb on + strand, within GFF5759 at 131.703 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.713 kb on + strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.714 kb on - strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.715 kb on + strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 131.716 kb on - strand, within GFF5759 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.147 kb on + strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.148 kb on - strand, within GFF5760 at 132.197 kb on + strand, within GFF5760 at 132.197 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.207 kb on + strand, within GFF5760 at 132.208 kb on - strand, within GFF5760 at 132.208 kb on - strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.246 kb on + strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.247 kb on - strand, within GFF5760 at 132.255 kb on + strand, within GFF5760 at 132.255 kb on + strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.256 kb on - strand, within GFF5760 at 132.321 kb on + strand, within GFF5760 at 132.321 kb on + strand, within GFF5760 at 132.321 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.480 kb on + strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.481 kb on - strand, within GFF5760 at 132.603 kb on + strand at 132.603 kb on + strand at 132.603 kb on + strand at 132.603 kb on + strand at 132.604 kb on - strand at 132.604 kb on - strand at 132.607 kb on + strand at 132.607 kb on + strand at 132.608 kb on - strand at 132.608 kb on - strand at 132.608 kb on - strand at 132.688 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.690 kb on + strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.691 kb on - strand at 132.723 kb on + strand at 132.723 kb on + strand at 132.724 kb on - strand at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.894 kb on + strand, within GFF5761 at 132.895 kb on - strand, within GFF5761 at 132.895 kb on - strand, within GFF5761 at 132.918 kb on + strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761 at 132.919 kb on - strand, within GFF5761
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 131,006 + +0.9 131,006 + -0.8 131,006 + +0.1 131,006 + -1.2 131,006 + +3.3 131,006 + -0.5 131,006 + -0.2 131,006 + +2.0 131,006 + +0.0 131,006 + -0.2 131,006 + -0.5 131,006 + +2.2 131,006 + -0.2 131,006 + +0.6 131,007 - +0.2 131,007 - -0.4 131,007 - -0.3 131,007 - +0.2 131,007 - -0.0 131,007 - -0.7 131,056 + GFF5758 0.15 +0.0 131,056 + GFF5758 0.15 +0.2 131,057 - GFF5758 0.15 -0.4 131,057 - GFF5758 0.15 +0.0 131,057 - GFF5758 0.15 -0.0 131,098 + GFF5758 0.29 +1.2 131,098 + GFF5758 0.29 +0.9 131,098 + GFF5758 0.29 -0.0 131,099 - GFF5758 0.29 +0.3 131,149 + GFF5758 0.46 +0.5 131,149 + GFF5758 0.46 +0.6 131,149 + GFF5758 0.46 +1.4 131,149 + GFF5758 0.46 -0.2 131,149 + GFF5758 0.46 -0.8 131,149 + GFF5758 0.46 +0.7 131,149 + GFF5758 0.46 -0.5 131,149 + GFF5758 0.46 +1.7 131,149 + GFF5758 0.46 +0.3 131,150 - GFF5758 0.46 -0.7 131,150 - GFF5758 0.46 -0.3 131,150 - GFF5758 0.46 +0.6 131,150 - GFF5758 0.46 -0.2 131,150 - GFF5758 0.46 -0.3 131,150 - GFF5758 0.46 +0.3 131,150 - GFF5758 0.46 +2.0 131,150 - GFF5758 0.46 +0.4 131,150 - GFF5758 0.46 -0.4 131,150 - GFF5758 0.46 +1.0 131,150 - GFF5758 0.46 -0.0 131,150 - GFF5758 0.46 +0.6 131,150 - GFF5758 0.46 -0.5 131,150 - GFF5758 0.46 -0.2 131,150 - GFF5758 0.46 -0.6 131,257 + GFF5758 0.82 +0.4 131,257 + GFF5758 0.82 +0.5 131,257 + GFF5758 0.82 -0.6 131,257 + GFF5758 0.82 -0.0 131,257 + GFF5758 0.82 +0.4 131,257 + GFF5758 0.82 +0.1 131,257 + GFF5758 0.82 +0.4 131,258 - GFF5758 0.82 -0.7 131,258 - GFF5758 0.82 -0.6 131,258 - GFF5758 0.82 -0.5 131,258 - GFF5758 0.82 -1.4 131,258 - GFF5758 0.82 -0.2 131,258 - GFF5758 0.82 -0.2 131,308 + +1.0 131,308 + +0.6 131,308 + +0.4 131,308 + +0.7 131,308 + -0.1 131,308 + -0.4 131,309 - +0.4 131,313 + -0.1 131,314 - +0.3 131,314 - +1.0 131,323 + +0.9 131,324 - +1.2 131,331 + +1.7 131,333 + +0.2 131,334 - -0.2 131,335 + +1.1 131,335 + -0.8 131,335 + +0.5 131,336 - +0.2 131,336 - -0.0 131,336 - -0.3 131,370 - -0.0 131,370 - +0.5 131,412 - +0.8 131,493 + +2.0 131,493 + +1.1 131,493 + +0.7 131,494 - -0.4 131,494 - -0.1 131,494 - +0.6 131,494 - -0.3 131,494 - -0.4 131,494 - -0.3 131,494 - +0.2 131,494 - -0.4 131,553 - -0.6 131,553 - -0.8 131,559 + +2.0 131,560 - -0.1 131,588 - -0.3 131,593 - -0.5 131,703 + GFF5759 0.21 +0.5 131,703 + GFF5759 0.21 -1.0 131,713 + GFF5759 0.24 -1.5 131,713 + GFF5759 0.24 -0.2 131,713 + GFF5759 0.24 -0.1 131,713 + GFF5759 0.24 -0.5 131,714 - GFF5759 0.24 -0.0 131,714 - GFF5759 0.24 -1.4 131,714 - GFF5759 0.24 -1.1 131,714 - GFF5759 0.24 -0.0 131,714 - GFF5759 0.24 -0.3 131,714 - GFF5759 0.24 +0.1 131,715 + GFF5759 0.24 -0.7 131,715 + GFF5759 0.24 -1.1 131,715 + GFF5759 0.24 -0.9 131,715 + GFF5759 0.24 -0.3 131,715 + GFF5759 0.24 -1.9 131,715 + GFF5759 0.24 +2.4 131,715 + GFF5759 0.24 -0.6 131,715 + GFF5759 0.24 -1.1 131,716 - GFF5759 0.24 -0.5 131,716 - GFF5759 0.24 -1.0 131,716 - GFF5759 0.24 -0.5 131,716 - GFF5759 0.24 +0.3 131,716 - GFF5759 0.24 +1.2 131,716 - GFF5759 0.24 +0.4 131,716 - GFF5759 0.24 +0.1 131,716 - GFF5759 0.24 -0.5 131,716 - GFF5759 0.24 +0.6 131,716 - GFF5759 0.24 -0.6 131,716 - GFF5759 0.24 +0.1 131,716 - GFF5759 0.24 +0.0 131,716 - GFF5759 0.24 -0.2 132,147 + GFF5760 0.22 +0.2 132,147 + GFF5760 0.22 -0.6 132,147 + GFF5760 0.22 -1.0 132,147 + GFF5760 0.22 +1.0 132,147 + GFF5760 0.22 -0.6 132,147 + GFF5760 0.22 -0.1 132,148 - GFF5760 0.22 +0.3 132,148 - GFF5760 0.22 -0.2 132,148 - GFF5760 0.22 -0.8 132,148 - GFF5760 0.22 -0.7 132,197 + GFF5760 0.30 -0.6 132,197 + GFF5760 0.30 -0.5 132,207 + GFF5760 0.32 -0.8 132,207 + GFF5760 0.32 -0.1 132,207 + GFF5760 0.32 -0.0 132,207 + GFF5760 0.32 -1.5 132,207 + GFF5760 0.32 -0.4 132,207 + GFF5760 0.32 +0.7 132,207 + GFF5760 0.32 -0.6 132,208 - GFF5760 0.32 -1.2 132,208 - GFF5760 0.32 -1.2 132,246 + GFF5760 0.39 -1.0 132,246 + GFF5760 0.39 -0.7 132,246 + GFF5760 0.39 -0.2 132,246 + GFF5760 0.39 +0.4 132,246 + GFF5760 0.39 +0.1 132,247 - GFF5760 0.39 -0.8 132,247 - GFF5760 0.39 +0.3 132,247 - GFF5760 0.39 +1.0 132,247 - GFF5760 0.39 -0.4 132,247 - GFF5760 0.39 -0.1 132,255 + GFF5760 0.40 +0.7 132,255 + GFF5760 0.40 +0.1 132,256 - GFF5760 0.40 -0.8 132,256 - GFF5760 0.40 +0.7 132,256 - GFF5760 0.40 -0.6 132,256 - GFF5760 0.40 -1.3 132,321 + GFF5760 0.52 -0.4 132,321 + GFF5760 0.52 +0.1 132,321 + GFF5760 0.52 +0.6 132,480 + GFF5760 0.79 -0.3 132,480 + GFF5760 0.79 -1.4 132,480 + GFF5760 0.79 -0.1 132,480 + GFF5760 0.79 -0.0 132,480 + GFF5760 0.79 +0.1 132,480 + GFF5760 0.79 +0.2 132,481 - GFF5760 0.79 +0.4 132,481 - GFF5760 0.79 +0.1 132,481 - GFF5760 0.79 -0.4 132,481 - GFF5760 0.79 -0.2 132,481 - GFF5760 0.79 -0.8 132,481 - GFF5760 0.79 +0.1 132,481 - GFF5760 0.79 +0.6 132,481 - GFF5760 0.79 -0.6 132,603 + -1.2 132,603 + -0.2 132,603 + +1.0 132,603 + +0.0 132,604 - +0.4 132,604 - -1.0 132,607 + +0.7 132,607 + -0.8 132,608 - +0.1 132,608 - +0.9 132,608 - +1.0 132,688 + -0.1 132,690 + +0.2 132,690 + -0.3 132,690 + -0.3 132,690 + -0.9 132,690 + -0.1 132,691 - -0.6 132,691 - -0.6 132,691 - -0.5 132,691 - -0.7 132,723 + +1.7 132,723 + -2.1 132,724 - -0.1 132,894 + GFF5761 0.26 +2.0 132,894 + GFF5761 0.26 +0.0 132,894 + GFF5761 0.26 -0.5 132,894 + GFF5761 0.26 +0.2 132,894 + GFF5761 0.26 +0.5 132,894 + GFF5761 0.26 -0.4 132,894 + GFF5761 0.26 -0.4 132,894 + GFF5761 0.26 +1.0 132,894 + GFF5761 0.26 +0.1 132,894 + GFF5761 0.26 +0.4 132,894 + GFF5761 0.26 +0.1 132,894 + GFF5761 0.26 +0.3 132,895 - GFF5761 0.26 +1.0 132,895 - GFF5761 0.26 -0.8 132,918 + GFF5761 0.29 -0.9 132,919 - GFF5761 0.29 -0.8 132,919 - GFF5761 0.29 -0.5 132,919 - GFF5761 0.29 +0.9 132,919 - GFF5761 0.29 +0.3
Or see this region's nucleotide sequence