Strain Fitness in Variovorax sp. SCN45 around GFF5660

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5659 and GFF5660 are separated by 48 nucleotidesGFF5660 and GFF5661 are separated by 90 nucleotidesGFF5661 and GFF5662 are separated by 33 nucleotidesGFF5662 and GFF5663 overlap by 4 nucleotides GFF5659 - Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing, at 34,356 to 36,797 GFF5659 GFF5660 - Formate dehydrogenase O alpha subunit (EC 1.2.1.2) @ selenocysteine-containing, at 36,846 to 37,433 GFF5660 GFF5661 - hypothetical protein, at 37,524 to 37,823 GFF5661 GFF5662 - no description, at 37,857 to 38,027 GFF5662 GFF5663 - ABC transporter, fused permease protein, at 38,024 to 40,540 GFF5663 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 35.855 kb on - strand, within GFF5659at 35.855 kb on - strand, within GFF5659at 35.855 kb on - strand, within GFF5659at 35.932 kb on + strand, within GFF5659at 35.932 kb on + strand, within GFF5659at 35.933 kb on - strand, within GFF5659at 35.944 kb on + strand, within GFF5659at 35.944 kb on + strand, within GFF5659at 35.944 kb on + strand, within GFF5659at 35.944 kb on + strand, within GFF5659at 35.944 kb on + strand, within GFF5659at 35.945 kb on - strand, within GFF5659at 35.945 kb on - strand, within GFF5659at 35.945 kb on - strand, within GFF5659at 35.945 kb on - strand, within GFF5659at 35.989 kb on + strand, within GFF5659at 35.989 kb on + strand, within GFF5659at 35.989 kb on + strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.990 kb on - strand, within GFF5659at 35.992 kb on + strand, within GFF5659at 35.993 kb on - strand, within GFF5659at 36.034 kb on + strand, within GFF5659at 36.034 kb on + strand, within GFF5659at 36.034 kb on + strand, within GFF5659at 36.034 kb on + strand, within GFF5659at 36.035 kb on - strand, within GFF5659at 36.035 kb on - strand, within GFF5659at 36.035 kb on - strand, within GFF5659at 36.035 kb on - strand, within GFF5659at 36.035 kb on - strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.211 kb on + strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.212 kb on - strand, within GFF5659at 36.257 kb on - strand, within GFF5659at 36.322 kb on + strand, within GFF5659at 36.323 kb on - strand, within GFF5659at 36.323 kb on - strand, within GFF5659at 36.331 kb on + strand, within GFF5659at 36.331 kb on + strand, within GFF5659at 36.415 kb on + strand, within GFF5659at 36.415 kb on + strand, within GFF5659at 36.415 kb on + strand, within GFF5659at 36.415 kb on + strand, within GFF5659at 36.416 kb on - strand, within GFF5659at 36.416 kb on - strand, within GFF5659at 36.436 kb on + strand, within GFF5659at 36.436 kb on + strand, within GFF5659at 36.437 kb on - strand, within GFF5659at 36.437 kb on - strand, within GFF5659at 36.437 kb on - strand, within GFF5659at 36.458 kb on - strand, within GFF5659at 36.458 kb on - strand, within GFF5659at 36.458 kb on - strand, within GFF5659at 36.487 kb on + strand, within GFF5659at 36.488 kb on - strand, within GFF5659at 36.520 kb on + strand, within GFF5659at 36.520 kb on + strand, within GFF5659at 36.520 kb on + strand, within GFF5659at 36.520 kb on + strand, within GFF5659at 36.521 kb on - strand, within GFF5659at 36.521 kb on - strand, within GFF5659at 36.521 kb on - strand, within GFF5659at 36.532 kb on + strand, within GFF5659at 36.533 kb on - strand, within GFF5659at 36.533 kb on - strand, within GFF5659at 36.533 kb on - strand, within GFF5659at 36.533 kb on - strand, within GFF5659at 36.565 kb on + strandat 36.565 kb on + strandat 36.565 kb on + strandat 36.565 kb on + strandat 36.565 kb on + strandat 36.565 kb on + strandat 36.566 kb on - strandat 36.566 kb on - strandat 36.619 kb on + strandat 36.619 kb on + strandat 36.619 kb on + strandat 36.619 kb on + strandat 36.619 kb on + strandat 36.620 kb on - strandat 36.620 kb on - strandat 36.620 kb on - strandat 36.620 kb on - strandat 36.620 kb on - strandat 36.620 kb on - strandat 36.620 kb on - strandat 36.622 kb on + strandat 36.623 kb on - strandat 36.623 kb on - strandat 36.623 kb on - strandat 36.623 kb on - strandat 36.623 kb on - strandat 36.772 kb on + strandat 36.910 kb on + strand, within GFF5660at 36.910 kb on + strand, within GFF5660at 36.910 kb on + strand, within GFF5660at 36.911 kb on - strand, within GFF5660at 36.911 kb on - strand, within GFF5660at 36.911 kb on - strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.249 kb on + strand, within GFF5660at 37.250 kb on - strand, within GFF5660at 37.250 kb on - strand, within GFF5660at 37.250 kb on - strand, within GFF5660at 37.250 kb on - strand, within GFF5660at 37.250 kb on - strand, within GFF5660at 37.279 kb on + strand, within GFF5660at 37.509 kb on + strandat 37.510 kb on - strandat 37.525 kb on + strandat 37.525 kb on + strandat 37.525 kb on + strandat 37.526 kb on - strandat 37.526 kb on - strandat 37.526 kb on - strandat 37.526 kb on - strandat 37.526 kb on - strandat 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.580 kb on + strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.581 kb on - strand, within GFF5661at 37.855 kb on + strandat 37.855 kb on + strandat 37.855 kb on + strandat 37.856 kb on - strandat 37.856 kb on - strandat 37.856 kb on - strandat 37.869 kb on + strandat 37.958 kb on + strand, within GFF5662at 37.959 kb on - strand, within GFF5662at 37.959 kb on - strand, within GFF5662at 37.959 kb on - strand, within GFF5662at 37.959 kb on - strand, within GFF5662at 37.975 kb on + strand, within GFF5662at 37.976 kb on - strand, within GFF5662at 38.285 kb on + strand, within GFF5663at 38.285 kb on + strand, within GFF5663at 38.286 kb on - strand, within GFF5663at 38.286 kb on - strand, within GFF5663at 38.286 kb on - strand, within GFF5663

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
35,855 - GFF5659 0.61 -0.5
35,855 - GFF5659 0.61 -0.2
35,855 - GFF5659 0.61 +1.7
35,932 + GFF5659 0.65 +0.1
35,932 + GFF5659 0.65 +0.4
35,933 - GFF5659 0.65 -0.5
35,944 + GFF5659 0.65 -0.2
35,944 + GFF5659 0.65 +0.2
35,944 + GFF5659 0.65 +0.6
35,944 + GFF5659 0.65 -0.7
35,944 + GFF5659 0.65 +0.1
35,945 - GFF5659 0.65 +0.6
35,945 - GFF5659 0.65 -0.6
35,945 - GFF5659 0.65 +0.8
35,945 - GFF5659 0.65 -0.0
35,989 + GFF5659 0.67 -0.6
35,989 + GFF5659 0.67 -1.2
35,989 + GFF5659 0.67 -0.4
35,990 - GFF5659 0.67 +0.4
35,990 - GFF5659 0.67 -1.2
35,990 - GFF5659 0.67 +0.7
35,990 - GFF5659 0.67 -0.0
35,990 - GFF5659 0.67 +1.0
35,990 - GFF5659 0.67 -1.0
35,990 - GFF5659 0.67 -1.0
35,990 - GFF5659 0.67 -0.1
35,990 - GFF5659 0.67 +0.4
35,990 - GFF5659 0.67 -0.4
35,992 + GFF5659 0.67 -1.0
35,993 - GFF5659 0.67 +1.2
36,034 + GFF5659 0.69 -0.5
36,034 + GFF5659 0.69 +0.5
36,034 + GFF5659 0.69 +0.5
36,034 + GFF5659 0.69 -0.6
36,035 - GFF5659 0.69 -1.5
36,035 - GFF5659 0.69 -0.8
36,035 - GFF5659 0.69 -0.3
36,035 - GFF5659 0.69 +0.1
36,035 - GFF5659 0.69 -0.9
36,211 + GFF5659 0.76 +1.1
36,211 + GFF5659 0.76 -0.9
36,211 + GFF5659 0.76 -0.9
36,211 + GFF5659 0.76 -0.8
36,211 + GFF5659 0.76 -1.0
36,211 + GFF5659 0.76 +0.5
36,211 + GFF5659 0.76 -0.5
36,211 + GFF5659 0.76 +0.5
36,211 + GFF5659 0.76 -0.3
36,211 + GFF5659 0.76 -0.6
36,211 + GFF5659 0.76 -0.6
36,211 + GFF5659 0.76 +1.4
36,211 + GFF5659 0.76 +1.4
36,212 - GFF5659 0.76 -1.0
36,212 - GFF5659 0.76 -0.5
36,212 - GFF5659 0.76 -0.4
36,212 - GFF5659 0.76 +0.6
36,212 - GFF5659 0.76 +0.1
36,212 - GFF5659 0.76 -2.0
36,212 - GFF5659 0.76 -0.9
36,212 - GFF5659 0.76 -0.3
36,212 - GFF5659 0.76 -0.2
36,257 - GFF5659 0.78 -0.2
36,322 + GFF5659 0.81 +0.1
36,323 - GFF5659 0.81 -0.2
36,323 - GFF5659 0.81 -0.4
36,331 + GFF5659 0.81 -0.6
36,331 + GFF5659 0.81 -0.0
36,415 + GFF5659 0.84 +0.1
36,415 + GFF5659 0.84 -1.0
36,415 + GFF5659 0.84 -0.6
36,415 + GFF5659 0.84 +0.1
36,416 - GFF5659 0.84 -0.4
36,416 - GFF5659 0.84 -0.6
36,436 + GFF5659 0.85 -0.6
36,436 + GFF5659 0.85 -0.0
36,437 - GFF5659 0.85 -0.9
36,437 - GFF5659 0.85 -1.0
36,437 - GFF5659 0.85 -1.8
36,458 - GFF5659 0.86 -1.0
36,458 - GFF5659 0.86 +5.0
36,458 - GFF5659 0.86 -1.0
36,487 + GFF5659 0.87 -0.0
36,488 - GFF5659 0.87 -1.6
36,520 + GFF5659 0.89 -0.5
36,520 + GFF5659 0.89 -1.8
36,520 + GFF5659 0.89 -0.5
36,520 + GFF5659 0.89 -0.8
36,521 - GFF5659 0.89 -0.2
36,521 - GFF5659 0.89 -0.5
36,521 - GFF5659 0.89 -0.5
36,532 + GFF5659 0.89 -0.0
36,533 - GFF5659 0.89 +0.2
36,533 - GFF5659 0.89 -0.9
36,533 - GFF5659 0.89 -1.7
36,533 - GFF5659 0.89 -1.0
36,565 + -1.0
36,565 + -0.1
36,565 + -0.8
36,565 + -0.6
36,565 + -0.0
36,565 + -0.1
36,566 - -1.1
36,566 - +1.0
36,619 + -0.7
36,619 + -0.5
36,619 + -1.4
36,619 + -1.0
36,619 + +0.9
36,620 - +0.2
36,620 - +0.7
36,620 - +0.4
36,620 - +0.1
36,620 - +0.5
36,620 - +0.2
36,620 - -1.1
36,622 + -0.3
36,623 - -1.2
36,623 - -0.8
36,623 - +0.5
36,623 - -0.0
36,623 - -0.1
36,772 + -0.2
36,910 + GFF5660 0.11 +0.2
36,910 + GFF5660 0.11 -0.3
36,910 + GFF5660 0.11 -1.3
36,911 - GFF5660 0.11 +0.0
36,911 - GFF5660 0.11 -0.6
36,911 - GFF5660 0.11 -1.2
37,249 + GFF5660 0.69 -1.8
37,249 + GFF5660 0.69 -0.8
37,249 + GFF5660 0.69 -2.0
37,249 + GFF5660 0.69 -1.9
37,249 + GFF5660 0.69 +0.4
37,249 + GFF5660 0.69 -0.2
37,249 + GFF5660 0.69 -0.4
37,249 + GFF5660 0.69 +0.4
37,249 + GFF5660 0.69 -0.6
37,250 - GFF5660 0.69 -0.3
37,250 - GFF5660 0.69 +0.2
37,250 - GFF5660 0.69 -1.1
37,250 - GFF5660 0.69 +0.4
37,250 - GFF5660 0.69 -0.2
37,279 + GFF5660 0.74 -1.4
37,509 + -0.1
37,510 - -1.1
37,525 + +0.0
37,525 + +3.0
37,525 + -0.4
37,526 - +0.1
37,526 - +0.7
37,526 - -1.0
37,526 - -0.2
37,526 - -0.7
37,580 + GFF5661 0.19 +0.2
37,580 + GFF5661 0.19 +0.1
37,580 + GFF5661 0.19 +2.0
37,580 + GFF5661 0.19 -0.0
37,580 + GFF5661 0.19 -0.2
37,580 + GFF5661 0.19 -0.2
37,580 + GFF5661 0.19 +0.1
37,580 + GFF5661 0.19 -0.6
37,580 + GFF5661 0.19 -1.0
37,581 - GFF5661 0.19 -0.3
37,581 - GFF5661 0.19 +1.5
37,581 - GFF5661 0.19 +0.8
37,581 - GFF5661 0.19 -0.0
37,581 - GFF5661 0.19 -1.6
37,581 - GFF5661 0.19 -1.0
37,581 - GFF5661 0.19 +0.1
37,581 - GFF5661 0.19 -0.1
37,581 - GFF5661 0.19 +1.4
37,855 + +0.6
37,855 + +0.2
37,855 + -1.4
37,856 - +0.0
37,856 - +0.2
37,856 - +0.1
37,869 + -0.3
37,958 + GFF5662 0.59 -0.7
37,959 - GFF5662 0.60 -0.4
37,959 - GFF5662 0.60 -1.9
37,959 - GFF5662 0.60 +0.0
37,959 - GFF5662 0.60 +0.8
37,975 + GFF5662 0.69 +0.6
37,976 - GFF5662 0.70 +1.4
38,285 + GFF5663 0.10 +0.6
38,285 + GFF5663 0.10 -0.8
38,286 - GFF5663 0.10 +0.2
38,286 - GFF5663 0.10 -0.5
38,286 - GFF5663 0.10 +0.5

Or see this region's nucleotide sequence