Strain Fitness in Variovorax sp. SCN45 around GFF5582

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
202,240	+		GFF5580	0.61	-1.1
202,240	+		GFF5580	0.61	+0.1
202,241	-		GFF5580	0.61	-0.4
202,241	-		GFF5580	0.61	+0.3
202,241	-		GFF5580	0.61	+0.6
202,241	-		GFF5580	0.61	-0.9
202,241	-		GFF5580	0.61	-1.3
202,318	+		GFF5580	0.67	-0.0
202,318	+		GFF5580	0.67	+0.2
202,319	-		GFF5580	0.67	-1.0
202,360	+		GFF5580	0.70	+1.2
202,360	+		GFF5580	0.70	-0.6
202,360	+		GFF5580	0.70	-0.8
202,360	+		GFF5580	0.70	+1.0
202,360	+		GFF5580	0.70	+0.8
202,360	+		GFF5580	0.70	+0.1
202,360	+		GFF5580	0.70	-1.0
202,360	+		GFF5580	0.70	+0.7
202,360	+		GFF5580	0.70	-0.1
202,360	+		GFF5580	0.70	+0.0
202,360	+		GFF5580	0.70	-0.0
202,360	+		GFF5580	0.70	+0.5
202,360	+		GFF5580	0.70	-0.8
202,361	-		GFF5580	0.70	-0.7
202,361	-		GFF5580	0.70	-1.1
202,361	-		GFF5580	0.70	+0.6
202,361	-		GFF5580	0.70	-0.7
202,361	-		GFF5580	0.70	+0.4
202,361	-		GFF5580	0.70	+0.2
202,361	-		GFF5580	0.70	-0.1
202,361	-		GFF5580	0.70	+0.2
202,361	-		GFF5580	0.70	+0.3
202,462	+		GFF5580	0.78	-0.2
202,462	+		GFF5580	0.78	+0.9
202,462	+		GFF5580	0.78	+0.6
202,462	+		GFF5580	0.78	-1.1
202,462	+		GFF5580	0.78	-0.0
202,463	+		GFF5580	0.78	+0.2
202,463	-		GFF5580	0.78	-0.2
202,463	-		GFF5580	0.78	-0.9
202,585	+		GFF5580	0.88	+0.6
202,594	+		GFF5580	0.88	-0.2
202,595	-		GFF5580	0.88	+0.7
202,595	-		GFF5580	0.88	-0.3
202,711	+				-0.7
202,711	+				-0.2
202,712	-				+0.5
202,712	-				+0.3
202,729	+				-0.5
202,729	+				-1.6
202,729	+				+1.7
202,729	+				-0.6
202,729	+				-0.0
202,729	+				+1.9
202,729	+				+0.3
202,729	+				-0.0
202,729	+				+1.4
202,729	+				+1.2
202,729	+				-1.3
202,729	+				-0.3
202,729	+				-0.5
202,730	-				-1.0
202,730	-				-0.4
202,730	-				+0.5
202,730	-				-0.3
202,730	-				-0.9
202,730	-				+1.8
202,730	-				+0.2
202,730	-				-0.3
202,730	-				-0.4
202,730	-				+0.3
202,730	-				-0.3
202,730	-				-1.5
202,735	+				-1.3
202,735	+				-0.3
202,735	+				-2.1
202,735	+				-0.2
202,735	+				+0.4
202,735	+				-0.8
202,735	+				+0.0
202,735	+				+1.2
202,735	+				-1.0
202,735	+				-0.2
202,735	+				-0.2
202,735	+				+1.6
202,735	+				-0.1
202,735	+				+0.1
202,736	-				+0.3
202,736	-				-0.3
202,736	-				-1.4
202,736	-				-1.1
202,736	-				+0.3
202,736	-				+0.5
202,736	-				-0.4
202,736	-				+0.4
202,741	+				-0.6
202,741	+				+0.9
202,741	+				+1.0
202,741	+				+0.5
202,741	+				+0.4
202,741	+				-1.5
202,741	+				-0.3
202,741	+				-0.2
202,742	-				+0.0
202,742	-				+1.2
202,742	-				+0.1
202,742	-				+0.0
202,742	-				-2.1
202,742	-				+0.4
202,742	-				+2.2
202,742	-				+0.6
202,761	+				-0.5
202,761	+				-1.0
202,762	-				+1.2
202,950	+		GFF5581	0.60	+0.4
202,950	+		GFF5581	0.60	+1.2
202,951	-		GFF5581	0.60	-0.0
202,993	+		GFF5581	0.73	-1.5
202,993	+		GFF5581	0.73	-0.8
202,993	+		GFF5581	0.73	-0.3
202,993	+		GFF5581	0.73	-0.2
202,993	+		GFF5581	0.73	+0.9
202,993	+		GFF5581	0.73	-1.0
202,993	+		GFF5581	0.73	-0.4
202,993	+		GFF5581	0.73	-0.5
202,994	-		GFF5581	0.74	+0.5
202,994	-		GFF5581	0.74	-0.5
202,994	-		GFF5581	0.74	-0.5
202,994	-		GFF5581	0.74	-0.2
202,994	-		GFF5581	0.74	+0.9
202,994	-		GFF5581	0.74	+0.3
202,994	-		GFF5581	0.74	+0.2
202,994	-		GFF5581	0.74	-1.7
202,994	-		GFF5581	0.74	-0.1
202,994	-		GFF5581	0.74	+0.7
202,994	-		GFF5581	0.74	-0.1
202,994	-		GFF5581	0.74	+2.0
202,994	-		GFF5581	0.74	+0.9
203,205	-				+0.6
203,205	-				-0.9
203,633	+		GFF5582	0.42	-0.7
203,633	+		GFF5582	0.42	+0.1
203,633	+		GFF5582	0.42	-0.8
203,634	-		GFF5582	0.42	-0.0
203,634	-		GFF5582	0.42	-0.4
203,634	-		GFF5582	0.42	+0.5
203,634	-		GFF5582	0.42	-1.0
203,634	-		GFF5582	0.42	-0.8
203,634	-		GFF5582	0.42	+1.0
203,634	-		GFF5582	0.42	+0.9
203,634	-		GFF5582	0.42	+0.0
203,636	-		GFF5582	0.42	+1.0
203,750	+		GFF5582	0.53	+0.4
203,750	+		GFF5582	0.53	+0.6
203,750	+		GFF5582	0.53	+0.5
203,751	-		GFF5582	0.53	+0.4
203,751	-		GFF5582	0.53	+1.2
203,751	-		GFF5582	0.53	+0.5
203,841	+		GFF5582	0.62	+0.2
203,841	+		GFF5582	0.62	-0.2
203,841	+		GFF5582	0.62	-0.5
203,842	-		GFF5582	0.62	+0.1
203,842	-		GFF5582	0.62	-0.9
203,885	+		GFF5582	0.66	-0.4
203,885	+		GFF5582	0.66	-0.1
203,885	+		GFF5582	0.66	+0.2
203,886	-		GFF5582	0.66	-0.1
203,886	-		GFF5582	0.66	+0.3
203,936	+		GFF5582	0.71	+0.5
203,936	+		GFF5582	0.71	+0.2
203,937	-		GFF5582	0.71	-0.2
203,937	-		GFF5582	0.71	+0.6
204,243	+				-0.6
204,243	+				-0.6
204,243	+				-0.2
204,243	+				+1.2
204,244	-				-0.2
204,244	-				-0.7
204,244	-				-0.6
204,398	+		GFF5583	0.11	-0.1
204,398	+		GFF5583	0.11	+1.2
204,399	-		GFF5583	0.11	+0.6
204,401	+		GFF5583	0.11	+0.7
204,401	+		GFF5583	0.11	+0.2
204,401	+		GFF5583	0.11	+0.8
204,401	+		GFF5583	0.11	+0.4
204,401	+		GFF5583	0.11	-1.4
204,401	+		GFF5583	0.11	-0.3
204,401	+		GFF5583	0.11	-0.2
204,401	+		GFF5583	0.11	-0.0
204,401	+		GFF5583	0.11	+0.5
204,401	+		GFF5583	0.11	-0.1
204,401	+		GFF5583	0.11	+0.6
204,401	+		GFF5583	0.11	-0.4
204,401	+		GFF5583	0.11	+1.2
204,402	-		GFF5583	0.11	-0.1
204,402	-		GFF5583	0.11	+0.2
204,402	-		GFF5583	0.11	-0.3
204,402	-		GFF5583	0.11	+0.5
204,402	-		GFF5583	0.11	+1.3
204,402	-		GFF5583	0.11	+2.2
204,402	-		GFF5583	0.11	-0.6
204,402	-		GFF5583	0.11	-0.2
204,402	-		GFF5583	0.11	+0.5
204,402	-		GFF5583	0.11	-1.7
204,402	-		GFF5583	0.11	+0.2
204,428	+		GFF5583	0.14	+1.0
204,429	-		GFF5583	0.14	-1.2
204,429	-		GFF5583	0.14	-1.1
204,429	-		GFF5583	0.14	+0.2
204,686	-		GFF5583	0.41	-0.9
204,734	+		GFF5583	0.46	-0.6
204,734	+		GFF5583	0.46	-0.3
204,734	+		GFF5583	0.46	-0.1
204,735	-		GFF5583	0.46	+0.1
204,735	-		GFF5583	0.46	-0.1
204,735	-		GFF5583	0.46	-0.6
204,735	-		GFF5583	0.46	+0.4