Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5522 and GFF5523 are separated by 55 nucleotides GFF5523 and GFF5524 are separated by 6 nucleotides GFF5524 and GFF5525 are separated by 142 nucleotides
GFF5522 - Uracil-DNA glycosylase, family 4 (EC 3.2.2.27), at 152,225 to 153,067
GFF5522
GFF5523 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 153,123 to 153,947
GFF5523
GFF5524 - Predicted transcriptional regulator, at 153,954 to 154,688
GFF5524
GFF5525 - FIG00933173: hypothetical protein, at 154,831 to 155,685
GFF5525
Position (kb) 153
154
155 Strain fitness (log2 ratio) -2
-1
0
1
2 at 153.109 kb on + strand at 153.520 kb on - strand, within GFF5523 at 153.631 kb on - strand, within GFF5523 at 153.682 kb on + strand, within GFF5523 at 153.682 kb on + strand, within GFF5523 at 153.683 kb on - strand, within GFF5523 at 153.706 kb on - strand, within GFF5523 at 153.861 kb on + strand, within GFF5523 at 153.862 kb on - strand, within GFF5523 at 153.862 kb on - strand, within GFF5523 at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.018 kb on + strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.019 kb on - strand at 154.183 kb on + strand, within GFF5524 at 154.183 kb on + strand, within GFF5524 at 154.183 kb on + strand, within GFF5524 at 154.184 kb on - strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.186 kb on + strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.187 kb on - strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.349 kb on + strand, within GFF5524 at 154.350 kb on - strand, within GFF5524 at 154.350 kb on - strand, within GFF5524 at 154.350 kb on - strand, within GFF5524 at 154.354 kb on + strand, within GFF5524 at 154.354 kb on + strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.355 kb on - strand, within GFF5524 at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.624 kb on + strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.625 kb on - strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.665 kb on + strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.666 kb on - strand at 154.699 kb on + strand at 154.699 kb on + strand at 154.699 kb on + strand at 154.699 kb on - strand at 154.700 kb on - strand at 154.700 kb on - strand at 154.700 kb on - strand at 154.747 kb on + strand at 154.748 kb on - strand at 154.748 kb on - strand at 154.750 kb on + strand at 154.792 kb on + strand at 155.041 kb on + strand, within GFF5525 at 155.042 kb on - strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.191 kb on + strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.192 kb on - strand, within GFF5525 at 155.452 kb on + strand, within GFF5525 at 155.488 kb on + strand, within GFF5525 at 155.488 kb on + strand, within GFF5525 at 155.488 kb on + strand, within GFF5525 at 155.488 kb on + strand, within GFF5525 at 155.488 kb on + strand, within GFF5525 at 155.488 kb on + strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.489 kb on - strand, within GFF5525 at 155.676 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 153,109 + -1.2 153,520 - GFF5523 0.48 +2.2 153,631 - GFF5523 0.62 -0.1 153,682 + GFF5523 0.68 +1.2 153,682 + GFF5523 0.68 +2.2 153,683 - GFF5523 0.68 +1.2 153,706 - GFF5523 0.71 -0.8 153,861 + GFF5523 0.89 +0.2 153,862 - GFF5523 0.90 -0.4 153,862 - GFF5523 0.90 -0.8 154,018 + -1.6 154,018 + -0.3 154,018 + -0.3 154,018 + +0.4 154,018 + -1.5 154,018 + -0.6 154,018 + -0.8 154,018 + -0.2 154,018 + +0.4 154,018 + -0.3 154,018 + -0.1 154,018 + -1.2 154,018 + -1.6 154,018 + +0.2 154,018 + +0.1 154,018 + -0.4 154,018 + +1.2 154,019 - +0.3 154,019 - -0.7 154,019 - +0.2 154,019 - +1.1 154,019 - -0.6 154,019 - +0.1 154,019 - -1.0 154,019 - -1.7 154,019 - -0.4 154,019 - +1.0 154,019 - -0.4 154,019 - +0.9 154,183 + GFF5524 0.31 -1.1 154,183 + GFF5524 0.31 -0.6 154,183 + GFF5524 0.31 +0.4 154,184 - GFF5524 0.31 +1.2 154,186 + GFF5524 0.32 -1.2 154,186 + GFF5524 0.32 -0.3 154,186 + GFF5524 0.32 -0.4 154,186 + GFF5524 0.32 -0.4 154,186 + GFF5524 0.32 +1.4 154,186 + GFF5524 0.32 -0.7 154,186 + GFF5524 0.32 -0.6 154,186 + GFF5524 0.32 +0.6 154,187 - GFF5524 0.32 -1.3 154,187 - GFF5524 0.32 +1.6 154,187 - GFF5524 0.32 +0.0 154,187 - GFF5524 0.32 +1.4 154,349 + GFF5524 0.54 -0.0 154,349 + GFF5524 0.54 +0.9 154,349 + GFF5524 0.54 -0.8 154,349 + GFF5524 0.54 -1.7 154,349 + GFF5524 0.54 -0.2 154,350 - GFF5524 0.54 +0.8 154,350 - GFF5524 0.54 -1.4 154,350 - GFF5524 0.54 -1.9 154,354 + GFF5524 0.54 +0.7 154,354 + GFF5524 0.54 +0.6 154,355 - GFF5524 0.55 -1.2 154,355 - GFF5524 0.55 -0.5 154,355 - GFF5524 0.55 +0.2 154,355 - GFF5524 0.55 -0.4 154,355 - GFF5524 0.55 +0.7 154,355 - GFF5524 0.55 -0.2 154,624 + +0.2 154,624 + +2.2 154,624 + +0.7 154,624 + -0.5 154,624 + -0.1 154,624 + +0.6 154,624 + +0.5 154,624 + -0.3 154,624 + +1.3 154,624 + -0.2 154,625 - -0.1 154,625 - -0.7 154,625 - -0.7 154,625 - +0.3 154,625 - +0.5 154,625 - -0.0 154,625 - -0.1 154,625 - -1.0 154,665 + -0.6 154,665 + -0.2 154,665 + -0.4 154,665 + -0.1 154,665 + -0.5 154,665 + -0.3 154,665 + +1.2 154,665 + -1.3 154,665 + -0.5 154,665 + -0.2 154,665 + +0.4 154,665 + +0.7 154,665 + +0.5 154,665 + -0.2 154,665 + -0.0 154,665 + +0.9 154,665 + +0.0 154,665 + +0.3 154,666 - +0.6 154,666 - +1.2 154,666 - +0.6 154,666 - +0.2 154,666 - -0.7 154,666 - +0.6 154,666 - -0.7 154,666 - +0.8 154,666 - -0.6 154,699 + -1.0 154,699 + +0.0 154,699 + -1.0 154,699 - +1.2 154,700 - -0.8 154,700 - -0.4 154,700 - +0.0 154,747 + +0.6 154,748 - -0.1 154,748 - -0.2 154,750 + +0.6 154,792 + -0.5 155,041 + GFF5525 0.25 +1.2 155,042 - GFF5525 0.25 -0.3 155,191 + GFF5525 0.42 -0.7 155,191 + GFF5525 0.42 +1.1 155,191 + GFF5525 0.42 +0.1 155,191 + GFF5525 0.42 -0.1 155,191 + GFF5525 0.42 +0.2 155,191 + GFF5525 0.42 -0.7 155,191 + GFF5525 0.42 -0.1 155,191 + GFF5525 0.42 -1.0 155,191 + GFF5525 0.42 -0.6 155,191 + GFF5525 0.42 -0.4 155,191 + GFF5525 0.42 +0.2 155,191 + GFF5525 0.42 -0.4 155,191 + GFF5525 0.42 -1.3 155,191 + GFF5525 0.42 +0.8 155,191 + GFF5525 0.42 +0.5 155,191 + GFF5525 0.42 -0.3 155,191 + GFF5525 0.42 -0.1 155,192 - GFF5525 0.42 -2.1 155,192 - GFF5525 0.42 +0.0 155,192 - GFF5525 0.42 -0.5 155,192 - GFF5525 0.42 -0.2 155,192 - GFF5525 0.42 +0.1 155,192 - GFF5525 0.42 -1.3 155,192 - GFF5525 0.42 -0.3 155,192 - GFF5525 0.42 +0.4 155,192 - GFF5525 0.42 +0.2 155,192 - GFF5525 0.42 -0.2 155,192 - GFF5525 0.42 -0.9 155,192 - GFF5525 0.42 -0.7 155,192 - GFF5525 0.42 -0.6 155,192 - GFF5525 0.42 -1.7 155,452 + GFF5525 0.73 -0.1 155,488 + GFF5525 0.77 +1.1 155,488 + GFF5525 0.77 -0.5 155,488 + GFF5525 0.77 +0.6 155,488 + GFF5525 0.77 -0.1 155,488 + GFF5525 0.77 +1.0 155,488 + GFF5525 0.77 +0.2 155,489 - GFF5525 0.77 -1.0 155,489 - GFF5525 0.77 -0.4 155,489 - GFF5525 0.77 -0.4 155,489 - GFF5525 0.77 -0.0 155,489 - GFF5525 0.77 -0.9 155,489 - GFF5525 0.77 -0.1 155,489 - GFF5525 0.77 +1.2 155,489 - GFF5525 0.77 -1.0 155,676 - +1.9
Or see this region's nucleotide sequence