Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5516 and GFF5517 are separated by 37 nucleotides GFF5517 and GFF5518 are separated by 39 nucleotides GFF5518 and GFF5519 are separated by 56 nucleotides GFF5519 and GFF5520 are separated by 111 nucleotides
GFF5516 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 147,298 to 148,740
GFF5516
GFF5517 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 148,778 to 149,365
GFF5517
GFF5518 - Nudix hydrolase family protein KPN_02621, at 149,405 to 149,998
GFF5518
GFF5519 - Transcriptional regulator, at 150,055 to 150,846
GFF5519
GFF5520 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 150,958 to 151,689
GFF5520
Position (kb) 149
150 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 148.424 kb on + strand, within GFF5516 at 148.424 kb on + strand, within GFF5516 at 148.424 kb on + strand, within GFF5516 at 148.424 kb on + strand, within GFF5516 at 148.424 kb on + strand, within GFF5516 at 148.424 kb on + strand, within GFF5516 at 148.424 kb on + strand, within GFF5516 at 148.425 kb on - strand, within GFF5516 at 148.425 kb on - strand, within GFF5516 at 148.425 kb on - strand, within GFF5516 at 148.425 kb on - strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.445 kb on + strand, within GFF5516 at 148.446 kb on - strand, within GFF5516 at 148.446 kb on - strand, within GFF5516 at 148.446 kb on - strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.475 kb on + strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.476 kb on - strand, within GFF5516 at 148.750 kb on - strand at 148.750 kb on - strand at 148.764 kb on - strand at 148.960 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.031 kb on + strand, within GFF5517 at 149.032 kb on - strand, within GFF5517 at 149.032 kb on - strand, within GFF5517 at 149.032 kb on - strand, within GFF5517 at 149.032 kb on - strand, within GFF5517 at 149.032 kb on - strand, within GFF5517 at 149.073 kb on + strand, within GFF5517 at 149.073 kb on + strand, within GFF5517 at 149.073 kb on + strand, within GFF5517 at 149.074 kb on - strand, within GFF5517 at 149.074 kb on - strand, within GFF5517 at 149.074 kb on - strand, within GFF5517 at 149.074 kb on - strand, within GFF5517 at 149.151 kb on + strand, within GFF5517 at 149.151 kb on + strand, within GFF5517 at 149.151 kb on + strand, within GFF5517 at 149.151 kb on + strand, within GFF5517 at 149.151 kb on + strand, within GFF5517 at 149.152 kb on - strand, within GFF5517 at 149.152 kb on - strand, within GFF5517 at 149.152 kb on - strand, within GFF5517 at 149.152 kb on - strand, within GFF5517 at 149.152 kb on - strand, within GFF5517 at 149.408 kb on + strand at 149.408 kb on + strand at 149.408 kb on + strand at 149.408 kb on + strand at 149.409 kb on - strand at 149.409 kb on - strand at 149.409 kb on - strand at 149.409 kb on - strand at 149.409 kb on - strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.445 kb on + strand at 149.446 kb on - strand at 149.446 kb on - strand at 149.446 kb on - strand at 149.589 kb on + strand, within GFF5518 at 149.589 kb on + strand, within GFF5518 at 149.590 kb on - strand, within GFF5518 at 149.590 kb on - strand, within GFF5518 at 149.590 kb on - strand, within GFF5518 at 149.676 kb on + strand, within GFF5518 at 149.677 kb on - strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.835 kb on + strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.836 kb on - strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.868 kb on + strand, within GFF5518 at 149.869 kb on - strand, within GFF5518 at 149.869 kb on - strand, within GFF5518 at 149.869 kb on - strand, within GFF5518 at 149.869 kb on - strand, within GFF5518 at 149.869 kb on - strand, within GFF5518 at 149.869 kb on - strand, within GFF5518 at 149.869 kb on - strand, within GFF5518 at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.940 kb on + strand at 149.941 kb on - strand at 149.941 kb on - strand at 149.941 kb on - strand at 149.941 kb on - strand at 149.941 kb on - strand at 149.941 kb on - strand at 149.941 kb on - strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.011 kb on + strand at 150.012 kb on - strand at 150.012 kb on - strand at 150.012 kb on - strand at 150.012 kb on - strand at 150.012 kb on - strand at 150.012 kb on - strand at 150.012 kb on - strand at 150.068 kb on - strand at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.577 kb on + strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.578 kb on - strand, within GFF5519 at 150.844 kb on + strand at 150.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 148,424 + GFF5516 0.78 -0.0 148,424 + GFF5516 0.78 -1.1 148,424 + GFF5516 0.78 +1.2 148,424 + GFF5516 0.78 -0.6 148,424 + GFF5516 0.78 -0.7 148,424 + GFF5516 0.78 +1.9 148,424 + GFF5516 0.78 +4.2 148,425 - GFF5516 0.78 +0.5 148,425 - GFF5516 0.78 -0.9 148,425 - GFF5516 0.78 -1.0 148,425 - GFF5516 0.78 -0.9 148,445 + GFF5516 0.79 -0.7 148,445 + GFF5516 0.79 -2.6 148,445 + GFF5516 0.79 -0.7 148,445 + GFF5516 0.79 -1.1 148,445 + GFF5516 0.79 +0.0 148,445 + GFF5516 0.79 -0.6 148,445 + GFF5516 0.79 +2.0 148,445 + GFF5516 0.79 -0.4 148,445 + GFF5516 0.79 -0.6 148,445 + GFF5516 0.79 -0.3 148,445 + GFF5516 0.79 +0.8 148,446 - GFF5516 0.80 -0.4 148,446 - GFF5516 0.80 +0.7 148,446 - GFF5516 0.80 +1.0 148,475 + GFF5516 0.82 -0.6 148,475 + GFF5516 0.82 -1.1 148,475 + GFF5516 0.82 +0.9 148,475 + GFF5516 0.82 +0.0 148,475 + GFF5516 0.82 -0.2 148,475 + GFF5516 0.82 +0.2 148,475 + GFF5516 0.82 +1.2 148,475 + GFF5516 0.82 -1.0 148,475 + GFF5516 0.82 -0.5 148,475 + GFF5516 0.82 -1.1 148,475 + GFF5516 0.82 -1.3 148,475 + GFF5516 0.82 +1.6 148,475 + GFF5516 0.82 +2.6 148,475 + GFF5516 0.82 -0.2 148,475 + GFF5516 0.82 -0.9 148,475 + GFF5516 0.82 -0.4 148,475 + GFF5516 0.82 -0.1 148,475 + GFF5516 0.82 -0.7 148,475 + GFF5516 0.82 -0.2 148,475 + GFF5516 0.82 -0.5 148,475 + GFF5516 0.82 -0.8 148,475 + GFF5516 0.82 -1.0 148,476 - GFF5516 0.82 +0.0 148,476 - GFF5516 0.82 -0.6 148,476 - GFF5516 0.82 +1.0 148,476 - GFF5516 0.82 -1.0 148,476 - GFF5516 0.82 -0.0 148,476 - GFF5516 0.82 -0.8 148,476 - GFF5516 0.82 -0.1 148,476 - GFF5516 0.82 +0.3 148,476 - GFF5516 0.82 -0.5 148,476 - GFF5516 0.82 -0.6 148,476 - GFF5516 0.82 -1.1 148,476 - GFF5516 0.82 -1.1 148,476 - GFF5516 0.82 -1.0 148,476 - GFF5516 0.82 -0.2 148,476 - GFF5516 0.82 -0.4 148,476 - GFF5516 0.82 -0.1 148,476 - GFF5516 0.82 -0.6 148,476 - GFF5516 0.82 -0.4 148,476 - GFF5516 0.82 -0.1 148,476 - GFF5516 0.82 -0.1 148,476 - GFF5516 0.82 -0.6 148,476 - GFF5516 0.82 -0.3 148,476 - GFF5516 0.82 -0.2 148,476 - GFF5516 0.82 -0.4 148,750 - +0.2 148,750 - -0.7 148,764 - -0.5 148,960 + GFF5517 0.31 -1.3 149,031 + GFF5517 0.43 -1.6 149,031 + GFF5517 0.43 -1.3 149,031 + GFF5517 0.43 +1.3 149,031 + GFF5517 0.43 +0.8 149,031 + GFF5517 0.43 -0.1 149,031 + GFF5517 0.43 -0.8 149,031 + GFF5517 0.43 +1.4 149,031 + GFF5517 0.43 +0.4 149,031 + GFF5517 0.43 -0.3 149,031 + GFF5517 0.43 -1.0 149,031 + GFF5517 0.43 -0.8 149,031 + GFF5517 0.43 -1.0 149,032 - GFF5517 0.43 -0.9 149,032 - GFF5517 0.43 -0.1 149,032 - GFF5517 0.43 +0.2 149,032 - GFF5517 0.43 +0.3 149,032 - GFF5517 0.43 +1.0 149,073 + GFF5517 0.50 +0.6 149,073 + GFF5517 0.50 +2.0 149,073 + GFF5517 0.50 -0.1 149,074 - GFF5517 0.50 +1.2 149,074 - GFF5517 0.50 -0.1 149,074 - GFF5517 0.50 -1.1 149,074 - GFF5517 0.50 -0.5 149,151 + GFF5517 0.63 +1.2 149,151 + GFF5517 0.63 -0.7 149,151 + GFF5517 0.63 -0.5 149,151 + GFF5517 0.63 -0.1 149,151 + GFF5517 0.63 +1.0 149,152 - GFF5517 0.64 -0.6 149,152 - GFF5517 0.64 -0.5 149,152 - GFF5517 0.64 +0.3 149,152 - GFF5517 0.64 +1.2 149,152 - GFF5517 0.64 +0.0 149,408 + -1.6 149,408 + -0.8 149,408 + +0.2 149,408 + +0.0 149,409 - -0.1 149,409 - -2.2 149,409 - -1.1 149,409 - -0.5 149,409 - -0.4 149,445 + -0.6 149,445 + -0.3 149,445 + -1.1 149,445 + -1.0 149,445 + +0.4 149,445 + -0.8 149,445 + -0.3 149,445 + +0.1 149,445 + -0.4 149,446 - +0.1 149,446 - -1.1 149,446 - +1.2 149,589 + GFF5518 0.31 -1.3 149,589 + GFF5518 0.31 -1.8 149,590 - GFF5518 0.31 +0.9 149,590 - GFF5518 0.31 -0.3 149,590 - GFF5518 0.31 -0.4 149,676 + GFF5518 0.46 +0.1 149,677 - GFF5518 0.46 +0.2 149,835 + GFF5518 0.72 +0.2 149,835 + GFF5518 0.72 -0.6 149,835 + GFF5518 0.72 -0.5 149,835 + GFF5518 0.72 -0.5 149,835 + GFF5518 0.72 -1.6 149,835 + GFF5518 0.72 -0.9 149,835 + GFF5518 0.72 -1.0 149,835 + GFF5518 0.72 -1.4 149,835 + GFF5518 0.72 +0.1 149,836 - GFF5518 0.73 +1.5 149,836 - GFF5518 0.73 -2.7 149,836 - GFF5518 0.73 -0.3 149,836 - GFF5518 0.73 -0.3 149,836 - GFF5518 0.73 +1.4 149,836 - GFF5518 0.73 -1.0 149,836 - GFF5518 0.73 -0.8 149,836 - GFF5518 0.73 -1.3 149,868 + GFF5518 0.78 -0.1 149,868 + GFF5518 0.78 +0.6 149,868 + GFF5518 0.78 -0.3 149,868 + GFF5518 0.78 -0.2 149,868 + GFF5518 0.78 -1.6 149,868 + GFF5518 0.78 -2.1 149,868 + GFF5518 0.78 +0.3 149,868 + GFF5518 0.78 -1.2 149,868 + GFF5518 0.78 +0.3 149,868 + GFF5518 0.78 -1.6 149,868 + GFF5518 0.78 -1.1 149,868 + GFF5518 0.78 -0.0 149,869 - GFF5518 0.78 -0.7 149,869 - GFF5518 0.78 -0.0 149,869 - GFF5518 0.78 +1.9 149,869 - GFF5518 0.78 +0.4 149,869 - GFF5518 0.78 -0.7 149,869 - GFF5518 0.78 -1.0 149,869 - GFF5518 0.78 -0.6 149,940 + -0.4 149,940 + +0.2 149,940 + -1.4 149,940 + +0.6 149,940 + -1.4 149,940 + -0.4 149,940 + +2.2 149,940 + -0.4 149,940 + +0.0 149,941 - -0.6 149,941 - -0.8 149,941 - +0.4 149,941 - +0.8 149,941 - -0.0 149,941 - +0.0 149,941 - -0.4 150,011 + -0.3 150,011 + +0.6 150,011 + -0.0 150,011 + +0.0 150,011 + -0.6 150,011 + +0.2 150,012 - -1.0 150,012 - -0.6 150,012 - -0.3 150,012 - +0.4 150,012 - -0.8 150,012 - -0.3 150,012 - +0.2 150,068 - -0.5 150,577 + GFF5519 0.66 +0.4 150,577 + GFF5519 0.66 -0.7 150,577 + GFF5519 0.66 -0.5 150,577 + GFF5519 0.66 -0.4 150,577 + GFF5519 0.66 +0.0 150,577 + GFF5519 0.66 +0.7 150,577 + GFF5519 0.66 +1.6 150,577 + GFF5519 0.66 -0.8 150,577 + GFF5519 0.66 -0.7 150,577 + GFF5519 0.66 -0.3 150,577 + GFF5519 0.66 -1.0 150,577 + GFF5519 0.66 -0.3 150,577 + GFF5519 0.66 -0.1 150,577 + GFF5519 0.66 -0.8 150,577 + GFF5519 0.66 +1.2 150,578 - GFF5519 0.66 +0.2 150,578 - GFF5519 0.66 -0.8 150,578 - GFF5519 0.66 -1.3 150,578 - GFF5519 0.66 -1.5 150,578 - GFF5519 0.66 -0.6 150,578 - GFF5519 0.66 +0.8 150,578 - GFF5519 0.66 -0.7 150,578 - GFF5519 0.66 -0.3 150,578 - GFF5519 0.66 -0.2 150,578 - GFF5519 0.66 -0.2 150,578 - GFF5519 0.66 -1.2 150,578 - GFF5519 0.66 -1.3 150,578 - GFF5519 0.66 -1.6 150,578 - GFF5519 0.66 +1.5 150,844 + -1.0 150,882 - +0.6
Or see this region's nucleotide sequence