Strain Fitness in Variovorax sp. SCN45 around GFF5323

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5321 and GFF5322 overlap by 4 nucleotidesGFF5322 and GFF5323 overlap by 4 nucleotidesGFF5323 and GFF5324 are separated by 86 nucleotidesGFF5324 and GFF5325 are separated by 34 nucleotides GFF5321 - Type IV pilus biogenesis protein PilO, at 198,450 to 199,127 GFF5321 GFF5322 - Type IV pilus biogenesis protein PilP, at 199,124 to 199,663 GFF5322 GFF5323 - Type IV pilus biogenesis protein PilQ, at 199,660 to 201,840 GFF5323 GFF5324 - Shikimate kinase I (EC 2.7.1.71), at 201,927 to 202,412 GFF5324 GFF5325 - 3-dehydroquinate synthase (EC 4.2.3.4), at 202,447 to 203,556 GFF5325 Position (kb) 199 200 201 202Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 198.687 kb on + strand, within GFF5321at 198.687 kb on + strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.688 kb on - strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.756 kb on + strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.757 kb on - strand, within GFF5321at 198.891 kb on + strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.892 kb on - strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.894 kb on + strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.895 kb on - strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.933 kb on + strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 198.934 kb on - strand, within GFF5321at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.289 kb on + strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.290 kb on - strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.508 kb on + strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.509 kb on - strand, within GFF5322at 199.511 kb on + strand, within GFF5322at 199.529 kb on + strand, within GFF5322at 199.529 kb on + strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.530 kb on - strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.544 kb on + strand, within GFF5322at 199.545 kb on - strand, within GFF5322at 199.629 kb on + strandat 199.629 kb on + strandat 199.629 kb on + strandat 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.011 kb on + strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.012 kb on - strand, within GFF5323at 200.039 kb on + strand, within GFF5323at 200.166 kb on + strand, within GFF5323at 200.166 kb on + strand, within GFF5323at 200.166 kb on + strand, within GFF5323at 200.167 kb on - strand, within GFF5323at 200.167 kb on - strand, within GFF5323at 200.167 kb on - strand, within GFF5323at 200.395 kb on + strand, within GFF5323at 200.395 kb on + strand, within GFF5323at 200.396 kb on - strand, within GFF5323at 200.473 kb on + strand, within GFF5323at 200.474 kb on - strand, within GFF5323at 200.513 kb on - strand, within GFF5323at 200.794 kb on + strand, within GFF5323at 200.794 kb on + strand, within GFF5323at 200.794 kb on + strand, within GFF5323at 200.794 kb on + strand, within GFF5323at 200.794 kb on + strand, within GFF5323at 200.794 kb on + strand, within GFF5323at 200.795 kb on - strand, within GFF5323at 200.795 kb on - strand, within GFF5323at 200.795 kb on - strand, within GFF5323at 200.795 kb on - strand, within GFF5323at 200.795 kb on - strand, within GFF5323at 200.945 kb on + strand, within GFF5323at 200.946 kb on - strand, within GFF5323at 201.117 kb on + strand, within GFF5323at 201.118 kb on - strand, within GFF5323at 201.132 kb on + strand, within GFF5323at 201.132 kb on + strand, within GFF5323at 201.279 kb on + strand, within GFF5323at 201.316 kb on + strand, within GFF5323at 201.384 kb on - strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.546 kb on + strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.547 kb on - strand, within GFF5323at 201.675 kb on + strandat 201.675 kb on + strandat 201.675 kb on + strandat 201.675 kb on + strandat 201.676 kb on - strandat 201.676 kb on - strandat 201.676 kb on - strandat 201.737 kb on - strandat 201.737 kb on - strandat 201.784 kb on + strandat 201.798 kb on + strandat 201.798 kb on + strandat 201.799 kb on - strandat 201.817 kb on - strandat 201.852 kb on - strandat 201.999 kb on + strand, within GFF5324at 201.999 kb on + strand, within GFF5324at 202.155 kb on + strand, within GFF5324at 202.155 kb on + strand, within GFF5324at 202.278 kb on + strand, within GFF5324at 202.460 kb on + strandat 202.460 kb on + strandat 202.461 kb on - strandat 202.461 kb on - strandat 202.461 kb on - strandat 202.618 kb on + strand, within GFF5325at 202.826 kb on - strand, within GFF5325at 202.826 kb on - strand, within GFF5325

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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198,687 + GFF5321 0.35 +4.1
198,687 + GFF5321 0.35 +3.7
198,688 - GFF5321 0.35 +3.5
198,688 - GFF5321 0.35 +3.7
198,688 - GFF5321 0.35 +4.4
198,756 + GFF5321 0.45 +5.1
198,756 + GFF5321 0.45 +4.5
198,756 + GFF5321 0.45 +4.0
198,756 + GFF5321 0.45 +4.2
198,756 + GFF5321 0.45 +4.0
198,756 + GFF5321 0.45 +3.7
198,757 - GFF5321 0.45 +4.0
198,757 - GFF5321 0.45 +4.1
198,757 - GFF5321 0.45 +4.3
198,757 - GFF5321 0.45 +4.2
198,757 - GFF5321 0.45 +3.6
198,757 - GFF5321 0.45 +4.4
198,757 - GFF5321 0.45 +4.5
198,757 - GFF5321 0.45 +3.9
198,757 - GFF5321 0.45 +4.0
198,891 + GFF5321 0.65 +4.0
198,892 - GFF5321 0.65 +4.3
198,892 - GFF5321 0.65 +3.0
198,892 - GFF5321 0.65 +3.8
198,892 - GFF5321 0.65 +3.9
198,892 - GFF5321 0.65 +4.4
198,892 - GFF5321 0.65 +4.4
198,892 - GFF5321 0.65 +4.3
198,892 - GFF5321 0.65 +3.9
198,892 - GFF5321 0.65 +4.3
198,894 + GFF5321 0.65 +3.7
198,894 + GFF5321 0.65 +3.9
198,894 + GFF5321 0.65 +4.2
198,894 + GFF5321 0.65 +4.0
198,894 + GFF5321 0.65 +2.4
198,894 + GFF5321 0.65 +4.0
198,894 + GFF5321 0.65 +3.3
198,894 + GFF5321 0.65 +4.1
198,894 + GFF5321 0.65 +4.3
198,895 - GFF5321 0.66 +3.1
198,895 - GFF5321 0.66 +4.2
198,895 - GFF5321 0.66 +4.5
198,895 - GFF5321 0.66 +4.0
198,895 - GFF5321 0.66 +4.4
198,895 - GFF5321 0.66 +4.1
198,895 - GFF5321 0.66 +4.0
198,895 - GFF5321 0.66 +4.1
198,895 - GFF5321 0.66 +3.8
198,933 + GFF5321 0.71 +4.6
198,933 + GFF5321 0.71 +4.0
198,933 + GFF5321 0.71 +4.0
198,933 + GFF5321 0.71 +3.9
198,933 + GFF5321 0.71 +3.8
198,934 - GFF5321 0.71 +3.9
198,934 - GFF5321 0.71 +3.5
198,934 - GFF5321 0.71 +4.1
199,289 + GFF5322 0.31 +4.2
199,289 + GFF5322 0.31 +3.9
199,289 + GFF5322 0.31 +4.8
199,289 + GFF5322 0.31 +4.4
199,289 + GFF5322 0.31 +4.4
199,289 + GFF5322 0.31 +3.7
199,289 + GFF5322 0.31 +4.1
199,289 + GFF5322 0.31 +3.8
199,289 + GFF5322 0.31 +4.0
199,290 - GFF5322 0.31 +3.9
199,290 - GFF5322 0.31 +3.9
199,290 - GFF5322 0.31 +4.4
199,290 - GFF5322 0.31 +4.2
199,290 - GFF5322 0.31 +3.8
199,508 + GFF5322 0.71 +4.7
199,508 + GFF5322 0.71 +3.9
199,508 + GFF5322 0.71 +3.8
199,509 - GFF5322 0.71 +4.2
199,509 - GFF5322 0.71 +3.5
199,509 - GFF5322 0.71 +4.1
199,509 - GFF5322 0.71 +3.9
199,509 - GFF5322 0.71 +4.9
199,509 - GFF5322 0.71 +3.7
199,509 - GFF5322 0.71 +4.3
199,511 + GFF5322 0.72 +4.1
199,529 + GFF5322 0.75 +4.3
199,529 + GFF5322 0.75 +3.5
199,530 - GFF5322 0.75 +3.6
199,530 - GFF5322 0.75 +3.8
199,530 - GFF5322 0.75 +4.1
199,544 + GFF5322 0.78 +3.9
199,544 + GFF5322 0.78 +4.1
199,544 + GFF5322 0.78 +3.4
199,545 - GFF5322 0.78 +3.9
199,629 + +3.7
199,629 + +4.1
199,629 + +3.9
200,011 + GFF5323 0.16 +2.6
200,011 + GFF5323 0.16 +4.0
200,011 + GFF5323 0.16 +3.9
200,011 + GFF5323 0.16 +4.6
200,011 + GFF5323 0.16 +3.9
200,011 + GFF5323 0.16 +4.2
200,011 + GFF5323 0.16 +3.8
200,011 + GFF5323 0.16 +4.0
200,012 - GFF5323 0.16 +3.9
200,012 - GFF5323 0.16 +3.8
200,012 - GFF5323 0.16 +4.7
200,012 - GFF5323 0.16 +3.9
200,012 - GFF5323 0.16 +4.0
200,012 - GFF5323 0.16 +3.0
200,012 - GFF5323 0.16 +5.7
200,012 - GFF5323 0.16 +3.2
200,012 - GFF5323 0.16 +4.1
200,012 - GFF5323 0.16 +4.1
200,039 + GFF5323 0.17 +4.2
200,166 + GFF5323 0.23 +6.0
200,166 + GFF5323 0.23 +3.7
200,166 + GFF5323 0.23 +4.2
200,167 - GFF5323 0.23 +4.4
200,167 - GFF5323 0.23 +4.1
200,167 - GFF5323 0.23 +3.9
200,395 + GFF5323 0.34 +3.6
200,395 + GFF5323 0.34 +4.9
200,396 - GFF5323 0.34 +4.0
200,473 + GFF5323 0.37 +4.9
200,474 - GFF5323 0.37 +3.8
200,513 - GFF5323 0.39 +4.1
200,794 + GFF5323 0.52 +4.3
200,794 + GFF5323 0.52 +4.0
200,794 + GFF5323 0.52 +4.6
200,794 + GFF5323 0.52 +4.1
200,794 + GFF5323 0.52 +3.9
200,794 + GFF5323 0.52 +4.1
200,795 - GFF5323 0.52 +3.2
200,795 - GFF5323 0.52 +3.9
200,795 - GFF5323 0.52 +2.7
200,795 - GFF5323 0.52 +3.1
200,795 - GFF5323 0.52 +4.0
200,945 + GFF5323 0.59 +4.1
200,946 - GFF5323 0.59 +4.0
201,117 + GFF5323 0.67 +3.9
201,118 - GFF5323 0.67 +4.1
201,132 + GFF5323 0.67 +4.2
201,132 + GFF5323 0.67 +3.9
201,279 + GFF5323 0.74 +3.8
201,316 + GFF5323 0.76 +4.1
201,384 - GFF5323 0.79 +4.2
201,546 + GFF5323 0.86 +4.2
201,546 + GFF5323 0.86 +5.1
201,546 + GFF5323 0.86 +2.6
201,546 + GFF5323 0.86 +3.3
201,546 + GFF5323 0.86 +4.1
201,546 + GFF5323 0.86 +3.4
201,546 + GFF5323 0.86 +3.8
201,546 + GFF5323 0.86 +4.0
201,546 + GFF5323 0.86 +4.0
201,547 - GFF5323 0.87 +4.2
201,547 - GFF5323 0.87 +3.6
201,547 - GFF5323 0.87 +4.2
201,547 - GFF5323 0.87 +4.0
201,547 - GFF5323 0.87 +3.9
201,547 - GFF5323 0.87 +3.7
201,547 - GFF5323 0.87 +3.8
201,547 - GFF5323 0.87 +4.0
201,547 - GFF5323 0.87 +3.9
201,675 + +3.7
201,675 + +4.0
201,675 + +3.6
201,675 + +4.2
201,676 - +4.1
201,676 - +3.9
201,676 - +3.8
201,737 - +4.1
201,737 - +3.0
201,784 + +3.4
201,798 + +2.7
201,798 + +3.0
201,799 - +3.4
201,817 - +3.3
201,852 - -0.7
201,999 + GFF5324 0.15 -0.2
201,999 + GFF5324 0.15 +2.1
202,155 + GFF5324 0.47 -2.5
202,155 + GFF5324 0.47 -0.2
202,278 + GFF5324 0.72 -0.2
202,460 + -0.1
202,460 + -0.1
202,461 - +0.5
202,461 - -0.5
202,461 - +0.4
202,618 + GFF5325 0.15 -1.4
202,826 - GFF5325 0.34 +1.1
202,826 - GFF5325 0.34 +0.5

Or see this region's nucleotide sequence