Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5203 and GFF5204 are separated by 66 nucleotides GFF5204 and GFF5205 are separated by 158 nucleotides GFF5205 and GFF5206 are separated by 37 nucleotides
GFF5203 - hypothetical protein, at 63,427 to 63,858
GFF5203
GFF5204 - hypothetical protein, at 63,925 to 64,329
GFF5204
GFF5205 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 64,488 to 67,055
GFF5205
GFF5206 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 67,093 to 69,330
GFF5206
Position (kb) 64
65
66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.758 kb on + strand, within GFF5203 at 63.758 kb on + strand, within GFF5203 at 63.846 kb on + strand at 63.846 kb on + strand at 63.847 kb on - strand at 63.847 kb on - strand at 63.847 kb on - strand at 63.880 kb on + strand at 63.880 kb on + strand at 63.881 kb on - strand at 63.906 kb on - strand at 63.906 kb on - strand at 64.715 kb on - strand at 64.715 kb on - strand at 64.903 kb on + strand, within GFF5205 at 65.134 kb on + strand, within GFF5205 at 65.134 kb on + strand, within GFF5205 at 65.134 kb on + strand, within GFF5205 at 65.135 kb on - strand, within GFF5205 at 65.135 kb on - strand, within GFF5205 at 65.135 kb on - strand, within GFF5205 at 65.270 kb on - strand, within GFF5205 at 65.338 kb on + strand, within GFF5205 at 65.338 kb on + strand, within GFF5205 at 65.338 kb on + strand, within GFF5205 at 65.338 kb on + strand, within GFF5205 at 65.338 kb on + strand, within GFF5205 at 65.339 kb on - strand, within GFF5205 at 65.339 kb on - strand, within GFF5205 at 65.339 kb on - strand, within GFF5205 at 65.339 kb on - strand, within GFF5205 at 65.339 kb on - strand, within GFF5205 at 65.339 kb on - strand, within GFF5205 at 65.536 kb on + strand, within GFF5205 at 65.537 kb on - strand, within GFF5205 at 65.537 kb on - strand, within GFF5205 at 65.537 kb on - strand, within GFF5205 at 66.250 kb on + strand, within GFF5205 at 66.251 kb on - strand, within GFF5205 at 66.745 kb on + strand, within GFF5205 at 66.746 kb on - strand, within GFF5205 at 66.763 kb on + strand, within GFF5205 at 66.763 kb on + strand, within GFF5205 at 66.763 kb on + strand, within GFF5205 at 66.764 kb on - strand, within GFF5205 at 67.071 kb on - strand at 67.419 kb on - strand, within GFF5206 at 67.562 kb on + strand, within GFF5206 at 68.026 kb on - strand, within GFF5206
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 63,758 + GFF5203 0.77 -0.5 63,758 + GFF5203 0.77 -0.9 63,846 + -0.1 63,846 + -0.5 63,847 - -0.2 63,847 - +0.3 63,847 - -1.9 63,880 + +0.9 63,880 + +0.1 63,881 - +0.6 63,906 - -0.1 63,906 - -0.1 64,715 - +0.5 64,715 - -0.2 64,903 + GFF5205 0.16 +0.8 65,134 + GFF5205 0.25 +1.5 65,134 + GFF5205 0.25 -0.5 65,134 + GFF5205 0.25 +1.9 65,135 - GFF5205 0.25 -1.2 65,135 - GFF5205 0.25 +0.1 65,135 - GFF5205 0.25 +0.1 65,270 - GFF5205 0.30 +0.0 65,338 + GFF5205 0.33 +0.4 65,338 + GFF5205 0.33 +0.0 65,338 + GFF5205 0.33 +2.5 65,338 + GFF5205 0.33 -1.3 65,338 + GFF5205 0.33 +1.6 65,339 - GFF5205 0.33 -0.4 65,339 - GFF5205 0.33 -0.4 65,339 - GFF5205 0.33 +0.7 65,339 - GFF5205 0.33 +0.1 65,339 - GFF5205 0.33 -1.0 65,339 - GFF5205 0.33 +0.2 65,536 + GFF5205 0.41 -0.3 65,537 - GFF5205 0.41 -0.1 65,537 - GFF5205 0.41 +1.3 65,537 - GFF5205 0.41 -2.4 66,250 + GFF5205 0.69 -0.9 66,251 - GFF5205 0.69 +0.3 66,745 + GFF5205 0.88 +0.3 66,746 - GFF5205 0.88 -3.2 66,763 + GFF5205 0.89 -0.0 66,763 + GFF5205 0.89 -0.1 66,763 + GFF5205 0.89 +0.5 66,764 - GFF5205 0.89 -0.9 67,071 - +0.5 67,419 - GFF5206 0.15 -0.1 67,562 + GFF5206 0.21 -0.1 68,026 - GFF5206 0.42 +0.6
Or see this region's nucleotide sequence