Strain Fitness in Variovorax sp. SCN45 around GFF5149

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
1,348	+		GFF5148	0.12	-0.3
1,348	+		GFF5148	0.12	-1.3
1,586	-		GFF5148	0.35	+0.4
1,586	-		GFF5148	0.35	+0.3
1,588	+		GFF5148	0.35	+0.5
1,588	+		GFF5148	0.35	+0.0
1,589	-		GFF5148	0.35	-0.5
1,589	-		GFF5148	0.35	-0.3
1,589	-		GFF5148	0.35	-0.5
1,589	-		GFF5148	0.35	-0.9
1,888	+		GFF5148	0.65	-0.5
1,888	+		GFF5148	0.65	-0.6
1,888	+		GFF5148	0.65	+0.1
1,889	-		GFF5148	0.65	-0.5
1,889	-		GFF5148	0.65	+0.5
1,928	-		GFF5148	0.69	-0.1
1,928	-		GFF5148	0.69	+0.8
1,966	+		GFF5148	0.73	-0.6
1,966	+		GFF5148	0.73	-0.5
1,966	+		GFF5148	0.73	-0.2
1,966	+		GFF5148	0.73	-1.2
1,966	+		GFF5148	0.73	-0.8
1,967	-		GFF5148	0.73	-0.7
1,967	-		GFF5148	0.73	-0.1
2,041	+		GFF5148	0.80	-0.0
2,041	+		GFF5148	0.80	-0.7
2,041	+		GFF5148	0.80	-0.2
2,041	+		GFF5148	0.80	-0.2
2,041	+		GFF5148	0.80	+0.1
2,041	+		GFF5148	0.80	+1.6
2,041	+		GFF5148	0.80	-0.2
2,041	+		GFF5148	0.80	+1.1
2,041	+		GFF5148	0.80	-0.5
2,041	+		GFF5148	0.80	+0.9
2,041	+		GFF5148	0.80	-0.2
2,042	-		GFF5148	0.80	-0.8
2,042	-		GFF5148	0.80	-0.1
2,042	-		GFF5148	0.80	-1.3
2,042	-		GFF5148	0.80	-0.6
2,042	-		GFF5148	0.80	+0.1
2,042	-		GFF5148	0.80	+0.0
2,042	-		GFF5148	0.80	-0.8
2,042	-		GFF5148	0.80	-1.2
2,042	-		GFF5148	0.80	+0.0
2,137	+		GFF5148	0.90	-0.3
2,137	+		GFF5148	0.90	+0.3
2,137	+		GFF5148	0.90	-1.0
2,137	+		GFF5148	0.90	-0.2
2,137	+		GFF5148	0.90	-0.2
2,137	+		GFF5148	0.90	-0.5
2,137	+		GFF5148	0.90	-0.3
2,138	-		GFF5148	0.90	-0.6
2,138	-		GFF5148	0.90	-0.6
2,138	-		GFF5148	0.90	+0.1
2,203	+				-1.0
2,203	+				-0.7
2,203	+				+0.3
2,204	-				-0.1
2,204	-				-0.2
2,204	-				+0.8
2,204	-				-0.3
2,204	-				-1.7
2,204	-				-0.7
2,204	-				-0.1
2,425	-		GFF5149	0.20	-0.4
2,745	+		GFF5149	0.55	-0.4
2,745	+		GFF5149	0.55	+0.0
2,745	+		GFF5149	0.55	-0.2
2,745	+		GFF5149	0.55	-0.1
2,746	-		GFF5149	0.55	-1.0
2,746	-		GFF5149	0.55	-0.0
2,746	-		GFF5149	0.55	-1.5
2,746	-		GFF5149	0.55	-0.9
2,746	-		GFF5149	0.55	+0.3
2,746	-		GFF5149	0.55	-0.4
2,746	-		GFF5149	0.55	-0.0
3,280	+				+0.1
3,280	+				-0.4
3,280	+				+1.2
3,280	+				-0.2
3,280	+				-0.1
3,280	+				-0.1
3,280	+				+0.7
3,280	+				-1.2
3,280	+				-0.6
3,280	+				-0.3
3,280	+				-0.2
3,280	+				-0.5
3,280	+				+0.1
3,280	+				-0.4
3,280	+				+0.3
3,280	+				-0.7
3,281	-				-0.3
3,281	-				-1.5
3,281	-				+1.8
3,281	-				+0.1
3,281	-				+0.1
3,281	-				-1.3
3,281	-				-0.6
3,281	-				+0.3
3,281	-				+0.5
3,281	-				-0.5
3,281	-				+0.4
3,281	-				+0.2
3,281	-				+0.8
3,281	-				-0.3
3,281	-				-0.3
3,281	-				-0.7
3,281	-				-0.8
3,320	-				+1.5
3,583	+		GFF5150	0.34	-0.7
3,584	-		GFF5150	0.34	+0.5
3,584	-		GFF5150	0.34	-0.2
3,584	-		GFF5150	0.34	-1.1
3,792	+		GFF5150	0.58	-0.2
3,792	+		GFF5150	0.58	+2.8
3,792	+		GFF5150	0.58	+0.2
3,792	+		GFF5150	0.58	-1.0
3,792	+		GFF5150	0.58	+0.0
3,792	+		GFF5150	0.58	+0.1
3,792	+		GFF5150	0.58	-0.6
3,792	+		GFF5150	0.58	-1.1
3,793	-		GFF5150	0.58	-0.7
3,793	-		GFF5150	0.58	+0.4
3,793	-		GFF5150	0.58	+0.9
3,793	-		GFF5150	0.58	-0.0
3,793	-		GFF5150	0.58	-0.1
3,793	-		GFF5150	0.58	-1.4
3,793	-		GFF5150	0.58	+0.1
3,796	+		GFF5150	0.59	-0.4
3,796	+		GFF5150	0.59	+0.5
3,796	+		GFF5150	0.59	+0.4
3,796	+		GFF5150	0.59	-0.9
3,796	+		GFF5150	0.59	-0.1
3,796	+		GFF5150	0.59	-0.5
3,796	+		GFF5150	0.59	+1.1
3,796	+		GFF5150	0.59	-0.0
3,796	+		GFF5150	0.59	-0.9
3,796	+		GFF5150	0.59	-0.7
3,796	+		GFF5150	0.59	+0.0
3,797	-		GFF5150	0.59	-1.0
3,797	-		GFF5150	0.59	-0.7
3,797	-		GFF5150	0.59	+0.3
3,797	-		GFF5150	0.59	+0.6
3,797	-		GFF5150	0.59	-0.5
3,797	-		GFF5150	0.59	-1.1
3,797	-		GFF5150	0.59	+2.7
3,797	-		GFF5150	0.59	-2.5
3,797	-		GFF5150	0.59	+0.6
3,797	-		GFF5150	0.59	-0.3
3,797	-		GFF5150	0.59	-0.1
3,797	-		GFF5150	0.59	-0.2
3,847	+		GFF5150	0.64	+1.2
3,847	+		GFF5150	0.64	+0.2
3,847	+		GFF5150	0.64	-0.1
3,847	+		GFF5150	0.64	-0.2
3,847	+		GFF5150	0.64	+2.1
3,848	-		GFF5150	0.65	+1.8
3,848	-		GFF5150	0.65	-0.3
3,848	-		GFF5150	0.65	+0.5
3,848	-		GFF5150	0.65	+0.5
3,848	-		GFF5150	0.65	+0.5
3,868	+		GFF5150	0.67	+0.7
3,868	+		GFF5150	0.67	+1.0
3,869	-		GFF5150	0.67	+0.4
3,869	-		GFF5150	0.67	-0.1
4,009	+		GFF5150	0.83	+0.0
4,009	+		GFF5150	0.83	+0.5
4,009	+		GFF5150	0.83	-0.3
4,009	+		GFF5150	0.83	+0.5
4,009	+		GFF5150	0.83	-0.2
4,009	+		GFF5150	0.83	-0.8
4,009	+		GFF5150	0.83	+0.1
4,009	+		GFF5150	0.83	+0.3
4,009	+		GFF5150	0.83	-0.5
4,009	+		GFF5150	0.83	-0.1
4,009	+		GFF5150	0.83	-0.6
4,009	+		GFF5150	0.83	-1.0
4,010	-		GFF5150	0.83	+0.0
4,010	-		GFF5150	0.83	-1.4
4,010	-		GFF5150	0.83	-1.3
4,010	-		GFF5150	0.83	-0.4
4,010	-		GFF5150	0.83	-1.0
4,010	-		GFF5150	0.83	-2.0
4,010	-		GFF5150	0.83	-0.6
4,010	-		GFF5150	0.83	-0.9
4,010	-		GFF5150	0.83	-0.0
4,010	-		GFF5150	0.83	-0.5
4,036	+		GFF5150	0.86	-0.7
4,036	+		GFF5150	0.86	+0.1
4,036	+		GFF5150	0.86	-0.3
4,036	+		GFF5150	0.86	+0.0
4,036	+		GFF5150	0.86	-1.7
4,036	+		GFF5150	0.86	-0.6
4,036	+		GFF5150	0.86	-0.1
4,036	+		GFF5150	0.86	-1.3
4,036	+		GFF5150	0.86	+0.0
4,037	-		GFF5150	0.86	+2.1
4,037	-		GFF5150	0.86	-0.7
4,037	-		GFF5150	0.86	-0.4
4,037	-		GFF5150	0.86	+0.0
4,037	-		GFF5150	0.86	+1.1
4,037	-		GFF5150	0.86	+0.1
4,037	-		GFF5150	0.86	-0.0
4,037	-		GFF5150	0.86	-0.6
4,037	-		GFF5150	0.86	-2.0
4,037	-		GFF5150	0.86	-0.1
4,037	-		GFF5150	0.86	-0.1
4,125	+				-0.8
4,125	+				+0.1
4,125	+				-0.9
4,125	+				+0.1
4,125	+				+0.1
4,125	+				+0.9
4,130	+				-0.4