Strain Fitness in Variovorax sp. SCN45 around GFF5031

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5029 and GFF5030 are separated by 46 nucleotidesGFF5030 and GFF5031 are separated by 54 nucleotidesGFF5031 and GFF5032 overlap by 4 nucleotidesGFF5032 and GFF5033 are separated by 4 nucleotides GFF5029 - Transcriptional regulator, IclR family, at 130,792 to 131,652 GFF5029 GFF5030 - no description, at 131,699 to 131,815 GFF5030 GFF5031 - ABC-type spermidine/putrescine transport systems, ATPase components, at 131,870 to 132,943 GFF5031 GFF5032 - ABC-type spermidine/putrescine transport system, permease component I, at 132,940 to 133,800 GFF5032 GFF5033 - ABC-type spermidine/putrescine transport system, permease component II, at 133,805 to 134,599 GFF5033 Position (kb) 131 132 133Strain fitness (log2 ratio) -2 -1 0 1 2at 131.070 kb on - strand, within GFF5029at 131.070 kb on - strand, within GFF5029at 131.108 kb on + strand, within GFF5029at 131.108 kb on + strand, within GFF5029at 131.108 kb on + strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.109 kb on - strand, within GFF5029at 131.120 kb on + strand, within GFF5029at 131.120 kb on + strand, within GFF5029at 131.120 kb on + strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.121 kb on - strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.129 kb on + strand, within GFF5029at 131.130 kb on - strand, within GFF5029at 131.444 kb on + strand, within GFF5029at 131.652 kb on + strandat 131.652 kb on + strandat 131.653 kb on - strandat 131.657 kb on - strandat 131.695 kb on + strandat 131.695 kb on + strandat 131.695 kb on + strandat 131.773 kb on + strand, within GFF5030at 131.774 kb on - strand, within GFF5030at 131.906 kb on + strandat 131.906 kb on + strandat 131.907 kb on - strandat 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.119 kb on + strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.120 kb on - strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.533 kb on + strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 132.534 kb on - strand, within GFF5031at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.057 kb on + strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.058 kb on - strand, within GFF5032at 133.105 kb on + strand, within GFF5032at 133.106 kb on - strand, within GFF5032at 133.129 kb on + strand, within GFF5032at 133.129 kb on + strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.130 kb on - strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.132 kb on + strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.133 kb on - strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.213 kb on + strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.214 kb on - strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.387 kb on + strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.388 kb on - strand, within GFF5032at 133.662 kb on - strand, within GFF5032at 133.666 kb on + strand, within GFF5032at 133.666 kb on + strand, within GFF5032at 133.666 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.675 kb on + strand, within GFF5032at 133.676 kb on - strand, within GFF5032at 133.676 kb on - strand, within GFF5032at 133.756 kb on + strandat 133.756 kb on + strandat 133.756 kb on + strandat 133.756 kb on + strandat 133.756 kb on + strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.757 kb on - strandat 133.781 kb on - strandat 133.781 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
131,070 - GFF5029 0.32 +0.4
131,070 - GFF5029 0.32 -0.7
131,108 + GFF5029 0.37 +0.3
131,108 + GFF5029 0.37 +0.4
131,108 + GFF5029 0.37 -0.4
131,109 - GFF5029 0.37 -0.0
131,109 - GFF5029 0.37 -0.3
131,109 - GFF5029 0.37 +0.2
131,109 - GFF5029 0.37 -1.0
131,109 - GFF5029 0.37 +0.8
131,109 - GFF5029 0.37 -1.0
131,120 + GFF5029 0.38 +0.4
131,120 + GFF5029 0.38 -0.3
131,120 + GFF5029 0.38 -0.9
131,121 - GFF5029 0.38 -0.0
131,121 - GFF5029 0.38 -0.1
131,121 - GFF5029 0.38 -2.3
131,121 - GFF5029 0.38 +0.4
131,121 - GFF5029 0.38 -0.1
131,129 + GFF5029 0.39 +0.4
131,129 + GFF5029 0.39 +0.5
131,129 + GFF5029 0.39 +0.1
131,129 + GFF5029 0.39 -0.5
131,130 - GFF5029 0.39 -0.4
131,444 + GFF5029 0.76 -0.9
131,652 + -0.2
131,652 + +1.2
131,653 - +1.5
131,657 - -0.4
131,695 + -0.4
131,695 + +0.1
131,695 + +0.6
131,773 + GFF5030 0.63 -0.7
131,774 - GFF5030 0.64 +1.3
131,906 + -1.0
131,906 + -0.1
131,907 - +0.5
132,119 + GFF5031 0.23 -1.4
132,119 + GFF5031 0.23 -0.2
132,119 + GFF5031 0.23 -1.1
132,119 + GFF5031 0.23 -0.7
132,119 + GFF5031 0.23 -0.9
132,119 + GFF5031 0.23 -0.5
132,119 + GFF5031 0.23 -0.2
132,119 + GFF5031 0.23 -1.2
132,119 + GFF5031 0.23 -0.7
132,119 + GFF5031 0.23 +0.4
132,120 - GFF5031 0.23 -1.3
132,120 - GFF5031 0.23 -0.6
132,120 - GFF5031 0.23 -0.8
132,120 - GFF5031 0.23 +1.3
132,120 - GFF5031 0.23 -0.9
132,120 - GFF5031 0.23 +0.2
132,533 + GFF5031 0.62 -0.3
132,533 + GFF5031 0.62 -2.4
132,533 + GFF5031 0.62 +0.5
132,533 + GFF5031 0.62 +0.0
132,533 + GFF5031 0.62 +0.9
132,533 + GFF5031 0.62 +0.3
132,533 + GFF5031 0.62 -0.1
132,533 + GFF5031 0.62 -1.2
132,533 + GFF5031 0.62 +0.5
132,533 + GFF5031 0.62 +2.7
132,534 - GFF5031 0.62 -1.4
132,534 - GFF5031 0.62 +2.1
132,534 - GFF5031 0.62 -0.5
132,534 - GFF5031 0.62 -0.4
132,534 - GFF5031 0.62 +0.1
132,534 - GFF5031 0.62 -0.2
132,534 - GFF5031 0.62 +0.6
132,534 - GFF5031 0.62 -0.8
133,057 + GFF5032 0.14 -0.3
133,057 + GFF5032 0.14 -0.2
133,057 + GFF5032 0.14 -0.2
133,057 + GFF5032 0.14 -1.6
133,057 + GFF5032 0.14 +1.1
133,057 + GFF5032 0.14 -0.6
133,057 + GFF5032 0.14 -0.5
133,058 - GFF5032 0.14 -0.4
133,058 - GFF5032 0.14 +1.1
133,058 - GFF5032 0.14 -0.4
133,058 - GFF5032 0.14 -0.5
133,105 + GFF5032 0.19 -1.1
133,106 - GFF5032 0.19 +0.5
133,129 + GFF5032 0.22 -0.7
133,129 + GFF5032 0.22 -0.1
133,130 - GFF5032 0.22 -0.0
133,130 - GFF5032 0.22 -0.5
133,130 - GFF5032 0.22 +0.2
133,130 - GFF5032 0.22 +0.1
133,132 + GFF5032 0.22 +0.4
133,132 + GFF5032 0.22 -0.2
133,132 + GFF5032 0.22 -1.1
133,132 + GFF5032 0.22 +0.5
133,132 + GFF5032 0.22 -0.6
133,132 + GFF5032 0.22 +0.3
133,133 - GFF5032 0.22 +1.5
133,133 - GFF5032 0.22 +0.3
133,133 - GFF5032 0.22 -0.4
133,133 - GFF5032 0.22 -0.4
133,133 - GFF5032 0.22 -0.2
133,213 + GFF5032 0.32 -0.1
133,213 + GFF5032 0.32 -0.2
133,213 + GFF5032 0.32 -0.8
133,213 + GFF5032 0.32 -1.2
133,213 + GFF5032 0.32 -0.5
133,213 + GFF5032 0.32 +0.2
133,213 + GFF5032 0.32 -0.9
133,213 + GFF5032 0.32 +0.6
133,213 + GFF5032 0.32 -0.0
133,213 + GFF5032 0.32 +1.3
133,213 + GFF5032 0.32 +0.6
133,213 + GFF5032 0.32 -1.4
133,213 + GFF5032 0.32 -1.2
133,213 + GFF5032 0.32 -0.2
133,214 - GFF5032 0.32 +0.4
133,214 - GFF5032 0.32 -1.6
133,214 - GFF5032 0.32 +0.1
133,214 - GFF5032 0.32 -0.3
133,214 - GFF5032 0.32 -0.3
133,214 - GFF5032 0.32 -1.2
133,214 - GFF5032 0.32 -0.1
133,214 - GFF5032 0.32 -0.2
133,214 - GFF5032 0.32 +0.8
133,214 - GFF5032 0.32 +0.1
133,214 - GFF5032 0.32 -1.3
133,214 - GFF5032 0.32 -0.5
133,214 - GFF5032 0.32 -0.9
133,214 - GFF5032 0.32 +0.0
133,214 - GFF5032 0.32 -0.5
133,214 - GFF5032 0.32 -0.7
133,387 + GFF5032 0.52 -0.5
133,387 + GFF5032 0.52 +0.2
133,387 + GFF5032 0.52 +1.1
133,387 + GFF5032 0.52 -0.6
133,388 - GFF5032 0.52 -0.7
133,388 - GFF5032 0.52 +0.3
133,388 - GFF5032 0.52 -0.4
133,388 - GFF5032 0.52 -0.2
133,388 - GFF5032 0.52 -0.5
133,388 - GFF5032 0.52 -0.8
133,388 - GFF5032 0.52 +0.1
133,388 - GFF5032 0.52 -1.4
133,662 - GFF5032 0.84 -1.4
133,666 + GFF5032 0.84 -0.2
133,666 + GFF5032 0.84 -0.3
133,666 + GFF5032 0.84 -0.6
133,675 + GFF5032 0.85 -0.5
133,675 + GFF5032 0.85 -0.4
133,675 + GFF5032 0.85 -0.8
133,675 + GFF5032 0.85 +0.6
133,676 - GFF5032 0.85 -2.2
133,676 - GFF5032 0.85 -0.3
133,756 + +0.0
133,756 + -0.2
133,756 + -1.1
133,756 + -0.4
133,756 + +1.1
133,757 - +0.3
133,757 - -0.1
133,757 - -0.5
133,757 - -0.0
133,757 - -0.0
133,757 - -0.2
133,757 - +0.3
133,757 - -0.9
133,757 - -0.7
133,781 - -0.7
133,781 - +0.2

Or see this region's nucleotide sequence