Strain Fitness in Variovorax sp. SCN45 around GFF4981

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
79,406	+		GFF4979	0.54	-0.2
79,406	+		GFF4979	0.54	+1.1
79,406	+		GFF4979	0.54	-0.0
79,406	+		GFF4979	0.54	-0.5
79,406	+		GFF4979	0.54	+0.7
79,406	+		GFF4979	0.54	+0.3
79,407	-		GFF4979	0.55	+0.4
79,407	-		GFF4979	0.55	-0.1
79,407	-		GFF4979	0.55	+1.1
79,407	-		GFF4979	0.55	+0.6
79,407	-		GFF4979	0.55	-0.1
79,407	-		GFF4979	0.55	-0.4
79,407	-		GFF4979	0.55	-0.5
79,407	-		GFF4979	0.55	+0.2
79,526	+		GFF4979	0.72	-1.0
79,526	+		GFF4979	0.72	-0.4
79,526	+		GFF4979	0.72	-1.1
79,526	+		GFF4979	0.72	-0.6
79,526	+		GFF4979	0.72	-0.4
79,526	+		GFF4979	0.72	-0.2
79,526	+		GFF4979	0.72	+0.8
79,526	+		GFF4979	0.72	-0.1
79,526	+		GFF4979	0.72	-0.2
79,526	+		GFF4979	0.72	-0.2
79,526	+		GFF4979	0.72	+1.1
79,527	-		GFF4979	0.72	-0.0
79,527	-		GFF4979	0.72	+2.1
79,527	-		GFF4979	0.72	-0.4
79,527	-		GFF4979	0.72	-0.4
79,527	-		GFF4979	0.72	+0.3
79,527	-		GFF4979	0.72	-0.3
79,527	-		GFF4979	0.72	-0.0
79,527	-		GFF4979	0.72	+0.5
79,527	-		GFF4979	0.72	+0.5
79,527	-		GFF4979	0.72	+0.9
79,527	-		GFF4979	0.72	+1.1
79,527	-		GFF4979	0.72	-0.5
79,527	-		GFF4979	0.72	-0.8
79,527	-		GFF4979	0.72	-0.4
79,527	-		GFF4979	0.72	-0.9
79,527	-		GFF4979	0.72	-0.4
79,527	-		GFF4979	0.72	-0.2
79,532	+		GFF4979	0.73	-0.4
79,532	+		GFF4979	0.73	+0.9
79,532	+		GFF4979	0.73	+0.8
79,532	+		GFF4979	0.73	-0.9
79,532	+		GFF4979	0.73	-0.2
79,532	+		GFF4979	0.73	-0.0
79,532	+		GFF4979	0.73	+0.5
79,532	+		GFF4979	0.73	+0.3
79,533	-		GFF4979	0.73	+0.5
79,533	-		GFF4979	0.73	-0.5
79,533	-		GFF4979	0.73	-0.3
79,533	-		GFF4979	0.73	-1.0
79,533	-		GFF4979	0.73	-1.5
79,533	-		GFF4979	0.73	+0.1
79,533	-		GFF4979	0.73	-0.9
79,533	-		GFF4979	0.73	-0.2
79,626	+		GFF4979	0.86	-0.4
79,627	-		GFF4979	0.87	+0.1
79,627	-		GFF4979	0.87	+0.6
79,759	-				+0.1
79,774	+				-0.5
79,774	+				-0.4
79,774	+				+0.2
79,775	-				-0.4
79,775	-				-0.1
79,783	+				-0.7
79,783	+				-0.3
79,784	-				+1.5
79,876	+		GFF4980	0.22	-1.2
79,876	+		GFF4980	0.22	-1.0
79,877	-		GFF4980	0.22	-0.1
79,877	-		GFF4980	0.22	-0.3
79,877	-		GFF4980	0.22	-0.0
79,877	-		GFF4980	0.22	+0.8
79,877	-		GFF4980	0.22	-0.1
79,877	-		GFF4980	0.22	+0.5
79,877	-		GFF4980	0.22	-1.6
79,877	-		GFF4980	0.22	-0.8
79,877	-		GFF4980	0.22	+0.1
79,888	+		GFF4980	0.24	+1.1
79,889	-		GFF4980	0.24	-0.4
79,924	+		GFF4980	0.32	+0.2
79,924	+		GFF4980	0.32	+0.5
79,924	+		GFF4980	0.32	-1.1
79,924	+		GFF4980	0.32	+0.2
79,924	+		GFF4980	0.32	-0.7
79,924	+		GFF4980	0.32	-0.3
79,925	-		GFF4980	0.32	-0.4
79,925	-		GFF4980	0.32	+1.0
79,925	-		GFF4980	0.32	-0.1
79,925	-		GFF4980	0.32	+0.8
79,925	-		GFF4980	0.32	-0.6
79,948	+		GFF4980	0.37	-1.0
79,949	-		GFF4980	0.37	-0.5
79,949	-		GFF4980	0.37	+1.7
79,949	-		GFF4980	0.37	-0.3
79,949	-		GFF4980	0.37	-0.7
80,292	+				-1.2
80,292	+				+0.5
80,293	-				-1.6
80,293	-				-1.5
80,293	-				+0.3
80,295	+				-0.6
80,295	+				-0.8
80,295	+				-0.1
80,295	+				+0.0
80,295	+				-0.5
80,295	+				+0.1
80,295	+				-1.6
80,295	+				+0.0
80,295	+				-0.3
80,295	+				-0.9
80,296	-				-0.5
80,296	-				+1.0
80,296	-				-0.2
80,296	-				-0.2
80,310	+				+0.3
80,310	+				-1.0
80,310	+				-2.6
80,310	+				-0.2
80,310	+				-0.0
80,311	-				-1.4
80,311	-				+0.3
80,340	-				+0.2
80,346	-				-0.8
80,346	-				-0.1
80,349	+				+0.0
80,349	+				-0.7
80,349	+				+0.1
80,349	+				+0.4
80,349	+				-1.7
80,349	+				+0.3
80,350	-				-0.5
80,350	-				-0.0
80,350	-				-1.3
80,350	-				-0.2
80,350	-				-0.5
80,636	+		GFF4981	0.13	+0.3
80,636	+		GFF4981	0.13	+0.7
80,636	+		GFF4981	0.13	-0.2
80,637	-		GFF4981	0.13	-0.9
80,637	-		GFF4981	0.13	-0.8
80,637	-		GFF4981	0.13	-0.2
80,637	-		GFF4981	0.13	-0.2
80,942	+		GFF4981	0.27	-0.7
80,943	-		GFF4981	0.27	+0.3
80,943	-		GFF4981	0.27	-0.2
80,969	+		GFF4981	0.28	-0.4
80,969	+		GFF4981	0.28	+0.5
80,969	+		GFF4981	0.28	-0.3
80,970	-		GFF4981	0.28	+0.3
80,970	-		GFF4981	0.28	-0.1
80,996	+		GFF4981	0.29	-0.5
80,996	+		GFF4981	0.29	-0.6
80,996	+		GFF4981	0.29	-0.2
80,996	+		GFF4981	0.29	+0.2
80,996	+		GFF4981	0.29	+0.3
80,996	+		GFF4981	0.29	-0.0
80,996	+		GFF4981	0.29	+0.5
80,996	+		GFF4981	0.29	-1.4
80,996	+		GFF4981	0.29	-2.2
80,996	+		GFF4981	0.29	-0.3
80,996	+		GFF4981	0.29	-0.6
80,996	+		GFF4981	0.29	+0.3
80,996	+		GFF4981	0.29	+0.3
80,996	+		GFF4981	0.29	-0.9
80,996	+		GFF4981	0.29	-0.4
80,996	+		GFF4981	0.29	-0.8
80,996	+		GFF4981	0.29	-0.2
80,996	+		GFF4981	0.29	-0.9
80,996	+		GFF4981	0.29	-1.1
80,996	+		GFF4981	0.29	-0.1
80,996	+		GFF4981	0.29	+0.9
80,996	+		GFF4981	0.29	+0.9
80,996	+		GFF4981	0.29	+0.5
80,997	-		GFF4981	0.29	-0.1
80,997	-		GFF4981	0.29	-0.7
80,997	-		GFF4981	0.29	+1.1
80,997	-		GFF4981	0.29	+0.6
80,997	-		GFF4981	0.29	-0.1
80,997	-		GFF4981	0.29	+0.2
80,997	-		GFF4981	0.29	-0.7
80,997	-		GFF4981	0.29	+0.5
80,997	-		GFF4981	0.29	+0.2
80,997	-		GFF4981	0.29	-1.4
80,997	-		GFF4981	0.29	+0.4
80,997	-		GFF4981	0.29	+1.5
80,997	-		GFF4981	0.29	+0.6
80,997	-		GFF4981	0.29	-1.6
80,997	-		GFF4981	0.29	-0.0
80,997	-		GFF4981	0.29	+0.1
80,997	-		GFF4981	0.29	-0.4
80,997	-		GFF4981	0.29	+1.1
81,277	+		GFF4981	0.42	+0.7
81,277	+		GFF4981	0.42	+2.1
81,277	+		GFF4981	0.42	+0.3
81,277	+		GFF4981	0.42	+1.6
81,277	+		GFF4981	0.42	+0.8
81,277	+		GFF4981	0.42	-0.2
81,277	+		GFF4981	0.42	+1.1
81,277	+		GFF4981	0.42	-1.1
81,277	+		GFF4981	0.42	+0.9
81,277	+		GFF4981	0.42	+0.0
81,277	+		GFF4981	0.42	-0.5
81,277	+		GFF4981	0.42	+0.2
81,277	+		GFF4981	0.42	+0.1
81,278	+		GFF4981	0.42	-0.3
81,278	-		GFF4981	0.42	-0.1
81,278	-		GFF4981	0.42	-0.7
81,278	-		GFF4981	0.42	-0.5
81,278	-		GFF4981	0.42	-0.3
81,278	-		GFF4981	0.42	-0.4
81,278	-		GFF4981	0.42	+0.3
81,278	-		GFF4981	0.42	+0.0
81,278	-		GFF4981	0.42	+1.8
81,278	-		GFF4981	0.42	-0.4
81,278	-		GFF4981	0.42	-0.2
81,278	-		GFF4981	0.42	+0.3
81,581	+		GFF4981	0.55	+0.1
81,581	+		GFF4981	0.55	-0.8
81,581	+		GFF4981	0.55	-0.6
81,581	+		GFF4981	0.55	-0.1
81,582	-		GFF4981	0.55	-0.7
81,582	-		GFF4981	0.55	-1.2
81,582	-		GFF4981	0.55	-0.1
81,582	-		GFF4981	0.55	-0.6
81,582	-		GFF4981	0.55	-1.8
81,582	-		GFF4981	0.55	+0.1
81,677	+		GFF4981	0.59	-0.1
81,677	+		GFF4981	0.59	+0.0
81,678	-		GFF4981	0.59	+0.3
81,678	-		GFF4981	0.59	+0.9
81,884	+		GFF4981	0.68	+0.4
81,884	+		GFF4981	0.68	-0.4
81,885	-		GFF4981	0.68	-0.6
81,885	-		GFF4981	0.68	-0.2
82,058	+		GFF4981	0.76	+2.2
82,058	+		GFF4981	0.76	+1.2
82,058	+		GFF4981	0.76	+0.3
82,058	+		GFF4981	0.76	-0.1
82,059	-		GFF4981	0.76	+0.7
82,059	-		GFF4981	0.76	+1.1
82,059	-		GFF4981	0.76	+0.1
82,059	-		GFF4981	0.76	+1.3
82,059	-		GFF4981	0.76	-0.1
82,059	-		GFF4981	0.76	-0.7
82,331	+		GFF4981	0.88	+4.4
82,331	+		GFF4981	0.88	-0.0
82,331	+		GFF4981	0.88	+0.6
82,331	+		GFF4981	0.88	-0.8
82,331	+		GFF4981	0.88	+0.2
82,331	+		GFF4981	0.88	-0.4
82,331	+		GFF4981	0.88	-0.2
82,332	-		GFF4981	0.88	+0.4
82,332	-		GFF4981	0.88	-1.1
82,332	-		GFF4981	0.88	-0.1
82,332	-		GFF4981	0.88	+1.2
82,332	-		GFF4981	0.88	-0.5
82,332	-		GFF4981	0.88	+1.4
82,864	+		GFF4982	0.48	-0.3
82,864	+		GFF4982	0.48	+0.9
82,864	+		GFF4982	0.48	-0.1
82,864	+		GFF4982	0.48	-0.0
82,864	+		GFF4982	0.48	+0.1
82,864	+		GFF4982	0.48	+0.9
82,864	+		GFF4982	0.48	-0.7
82,864	+		GFF4982	0.48	+1.0
82,865	-		GFF4982	0.48	-0.0
82,865	-		GFF4982	0.48	-1.2
82,865	-		GFF4982	0.48	-0.3
82,865	-		GFF4982	0.48	-1.1
82,865	-		GFF4982	0.48	+0.1
82,865	-		GFF4982	0.48	-1.2
82,865	-		GFF4982	0.48	-0.6
82,865	-		GFF4982	0.48	+0.9
83,424	+		GFF4983	0.18	+0.1
83,424	+		GFF4983	0.18	-0.8
83,424	+		GFF4983	0.18	-0.2
83,424	+		GFF4983	0.18	+1.5
83,424	+		GFF4983	0.18	+0.2
83,424	+		GFF4983	0.18	+0.7
83,425	-		GFF4983	0.18	-0.1
83,425	-		GFF4983	0.18	-0.6
83,425	-		GFF4983	0.18	-0.1
83,425	-		GFF4983	0.18	-0.2
83,425	-		GFF4983	0.18	+0.0
83,425	-		GFF4983	0.18	-0.5
83,425	-		GFF4983	0.18	+0.1
83,425	-		GFF4983	0.18	-0.6
83,425	-		GFF4983	0.18	+0.2
83,482	-		GFF4983	0.22	+0.2
83,557	-		GFF4983	0.28	-0.3
83,557	-		GFF4983	0.28	-0.5
83,557	-		GFF4983	0.28	-0.4
83,557	-		GFF4983	0.28	+0.8
83,557	-		GFF4983	0.28	-0.9
83,557	-		GFF4983	0.28	-0.5