Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4971 and GFF4972 overlap by 8 nucleotides GFF4972 and GFF4973 overlap by 4 nucleotides GFF4973 and GFF4974 overlap by 4 nucleotides GFF4974 and GFF4975 are separated by 13 nucleotides
GFF4971 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 71,761 to 72,480
GFF4971
GFF4972 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 72,473 to 73,237
GFF4972
GFF4973 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 73,234 to 74,217
GFF4973
GFF4974 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 74,214 to 75,116
GFF4974
GFF4975 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 75,130 to 76,347
GFF4975
Position (kb) 73
74
75 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 72.438 kb on - strand at 72.501 kb on + strand at 72.501 kb on + strand at 72.502 kb on - strand at 72.503 kb on - strand at 73.071 kb on + strand, within GFF4972 at 73.071 kb on + strand, within GFF4972 at 73.072 kb on - strand, within GFF4972 at 73.072 kb on - strand, within GFF4972 at 73.352 kb on + strand, within GFF4973 at 73.352 kb on + strand, within GFF4973 at 73.352 kb on + strand, within GFF4973 at 73.353 kb on - strand, within GFF4973 at 73.532 kb on + strand, within GFF4973 at 73.532 kb on + strand, within GFF4973 at 73.532 kb on + strand, within GFF4973 at 73.533 kb on - strand, within GFF4973 at 73.533 kb on - strand, within GFF4973 at 73.533 kb on - strand, within GFF4973 at 73.533 kb on - strand, within GFF4973 at 73.533 kb on - strand, within GFF4973 at 73.727 kb on + strand, within GFF4973 at 73.727 kb on + strand, within GFF4973 at 73.754 kb on + strand, within GFF4973 at 73.754 kb on + strand, within GFF4973 at 73.871 kb on + strand, within GFF4973 at 73.871 kb on + strand, within GFF4973 at 73.871 kb on + strand, within GFF4973 at 73.872 kb on - strand, within GFF4973 at 73.872 kb on - strand, within GFF4973 at 73.997 kb on + strand, within GFF4973 at 73.997 kb on + strand, within GFF4973 at 74.111 kb on + strand, within GFF4973 at 74.111 kb on + strand, within GFF4973 at 74.111 kb on + strand, within GFF4973 at 74.111 kb on + strand, within GFF4973 at 74.112 kb on - strand, within GFF4973 at 74.112 kb on - strand, within GFF4973 at 74.112 kb on - strand, within GFF4973 at 74.120 kb on + strand at 74.218 kb on - strand at 74.218 kb on - strand at 74.623 kb on + strand, within GFF4974 at 74.624 kb on - strand, within GFF4974 at 74.624 kb on - strand, within GFF4974 at 74.782 kb on + strand, within GFF4974 at 74.917 kb on + strand, within GFF4974 at 75.047 kb on - strand at 75.140 kb on + strand at 75.140 kb on + strand at 75.140 kb on + strand at 75.141 kb on - strand at 75.141 kb on - strand at 75.141 kb on - strand at 75.141 kb on - strand at 75.141 kb on - strand at 75.141 kb on - strand at 75.158 kb on + strand at 75.158 kb on + strand at 75.159 kb on - strand at 75.203 kb on + strand at 75.203 kb on + strand at 75.203 kb on + strand at 75.203 kb on + strand at 75.203 kb on + strand at 75.203 kb on + strand at 75.204 kb on - strand at 75.204 kb on - strand at 75.204 kb on - strand at 75.204 kb on - strand at 75.204 kb on - strand at 75.204 kb on - strand at 75.204 kb on - strand at 75.204 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 72,438 - +1.3 72,501 + -0.4 72,501 + -0.1 72,502 - +1.7 72,503 - +0.6 73,071 + GFF4972 0.78 +0.3 73,071 + GFF4972 0.78 +0.1 73,072 - GFF4972 0.78 -0.3 73,072 - GFF4972 0.78 -0.5 73,352 + GFF4973 0.12 -1.5 73,352 + GFF4973 0.12 +4.3 73,352 + GFF4973 0.12 +0.7 73,353 - GFF4973 0.12 -1.8 73,532 + GFF4973 0.30 -2.0 73,532 + GFF4973 0.30 +0.3 73,532 + GFF4973 0.30 +0.5 73,533 - GFF4973 0.30 +0.7 73,533 - GFF4973 0.30 -0.1 73,533 - GFF4973 0.30 +0.5 73,533 - GFF4973 0.30 -0.4 73,533 - GFF4973 0.30 +0.5 73,727 + GFF4973 0.50 +0.2 73,727 + GFF4973 0.50 +0.2 73,754 + GFF4973 0.53 -1.0 73,754 + GFF4973 0.53 -0.6 73,871 + GFF4973 0.65 +0.8 73,871 + GFF4973 0.65 -1.0 73,871 + GFF4973 0.65 -0.9 73,872 - GFF4973 0.65 -0.5 73,872 - GFF4973 0.65 -0.4 73,997 + GFF4973 0.78 -0.1 73,997 + GFF4973 0.78 -0.7 74,111 + GFF4973 0.89 -0.6 74,111 + GFF4973 0.89 +0.0 74,111 + GFF4973 0.89 +0.6 74,111 + GFF4973 0.89 +0.2 74,112 - GFF4973 0.89 +0.5 74,112 - GFF4973 0.89 -0.6 74,112 - GFF4973 0.89 +1.3 74,120 + -1.1 74,218 - +0.8 74,218 - +0.1 74,623 + GFF4974 0.45 -0.6 74,624 - GFF4974 0.45 +0.8 74,624 - GFF4974 0.45 +0.1 74,782 + GFF4974 0.63 -0.5 74,917 + GFF4974 0.78 -0.3 75,047 - -0.4 75,140 + +0.5 75,140 + +0.2 75,140 + +0.0 75,141 - +1.1 75,141 - -0.4 75,141 - -0.0 75,141 - -1.0 75,141 - -0.3 75,141 - -0.9 75,158 + -0.0 75,158 + +0.4 75,159 - -0.0 75,203 + +1.5 75,203 + -0.3 75,203 + +0.1 75,203 + -0.8 75,203 + +0.6 75,203 + -0.5 75,204 - -0.2 75,204 - -0.2 75,204 - +0.8 75,204 - -0.9 75,204 - -0.3 75,204 - +0.1 75,204 - -0.8 75,204 - +0.1
Or see this region's nucleotide sequence