Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4919 and GFF4920 are separated by 10 nucleotides GFF4920 and GFF4921 are separated by 52 nucleotides GFF4921 and GFF4922 are separated by 185 nucleotides GFF4922 and GFF4923 are separated by 6 nucleotides
GFF4919 - hypothetical protein, at 12,737 to 13,396
GFF4919
GFF4920 - Isochorismatase family protein YecD, at 13,407 to 14,084
GFF4920
GFF4921 - hypothetical protein, at 14,137 to 14,517
GFF4921
GFF4922 - hypothetical protein, at 14,703 to 15,194
GFF4922
GFF4923 - Substrate-specific component BioY of biotin ECF transporter, at 15,201 to 15,791
GFF4923
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.271 kb on + strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.272 kb on - strand, within GFF4919 at 13.380 kb on + strand at 13.380 kb on + strand at 13.380 kb on + strand at 13.558 kb on + strand, within GFF4920 at 13.559 kb on - strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.675 kb on + strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 13.676 kb on - strand, within GFF4920 at 14.021 kb on + strand at 14.032 kb on + strand at 14.139 kb on - strand at 14.139 kb on - strand at 14.139 kb on - strand at 14.139 kb on - strand at 14.249 kb on + strand, within GFF4921 at 14.249 kb on + strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.250 kb on - strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.354 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.441 kb on + strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.442 kb on - strand, within GFF4921 at 14.602 kb on + strand at 14.602 kb on + strand at 14.606 kb on + strand at 14.606 kb on + strand at 14.606 kb on + strand at 14.606 kb on + strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.607 kb on - strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.691 kb on + strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.692 kb on - strand at 14.874 kb on + strand, within GFF4922 at 14.874 kb on + strand, within GFF4922 at 14.874 kb on + strand, within GFF4922 at 14.875 kb on - strand, within GFF4922 at 14.875 kb on - strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.934 kb on + strand, within GFF4922 at 14.935 kb on - strand, within GFF4922 at 14.935 kb on - strand, within GFF4922 at 14.935 kb on - strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.072 kb on + strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.073 kb on - strand, within GFF4922 at 15.084 kb on + strand, within GFF4922 at 15.084 kb on + strand, within GFF4922 at 15.084 kb on + strand, within GFF4922 at 15.085 kb on - strand, within GFF4922 at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.147 kb on + strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.148 kb on - strand at 15.370 kb on + strand, within GFF4923 at 15.370 kb on + strand, within GFF4923 at 15.370 kb on + strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923 at 15.371 kb on - strand, within GFF4923
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 13,271 + GFF4919 0.81 +0.3 13,271 + GFF4919 0.81 -0.5 13,271 + GFF4919 0.81 -1.8 13,271 + GFF4919 0.81 -0.0 13,271 + GFF4919 0.81 -1.4 13,271 + GFF4919 0.81 -0.2 13,271 + GFF4919 0.81 -0.2 13,271 + GFF4919 0.81 -0.1 13,271 + GFF4919 0.81 +0.6 13,271 + GFF4919 0.81 +0.2 13,271 + GFF4919 0.81 -0.7 13,271 + GFF4919 0.81 -0.4 13,271 + GFF4919 0.81 -0.4 13,271 + GFF4919 0.81 -0.1 13,271 + GFF4919 0.81 -0.7 13,271 + GFF4919 0.81 -0.7 13,272 - GFF4919 0.81 -0.0 13,272 - GFF4919 0.81 -0.2 13,272 - GFF4919 0.81 +0.2 13,272 - GFF4919 0.81 -2.6 13,272 - GFF4919 0.81 -1.1 13,272 - GFF4919 0.81 -0.0 13,272 - GFF4919 0.81 -0.3 13,272 - GFF4919 0.81 +0.9 13,272 - GFF4919 0.81 -0.1 13,272 - GFF4919 0.81 -0.0 13,272 - GFF4919 0.81 -0.9 13,272 - GFF4919 0.81 -0.4 13,272 - GFF4919 0.81 +0.1 13,272 - GFF4919 0.81 -0.0 13,272 - GFF4919 0.81 +0.3 13,380 + -3.4 13,380 + +1.7 13,380 + -0.1 13,558 + GFF4920 0.22 +0.2 13,559 - GFF4920 0.22 +0.2 13,675 + GFF4920 0.40 -1.0 13,675 + GFF4920 0.40 -1.2 13,675 + GFF4920 0.40 -0.4 13,675 + GFF4920 0.40 +0.3 13,676 - GFF4920 0.40 +0.3 13,676 - GFF4920 0.40 -0.0 13,676 - GFF4920 0.40 +0.6 13,676 - GFF4920 0.40 -0.7 13,676 - GFF4920 0.40 +0.2 13,676 - GFF4920 0.40 +1.0 13,676 - GFF4920 0.40 +0.6 13,676 - GFF4920 0.40 +0.1 13,676 - GFF4920 0.40 +0.3 14,021 + -0.5 14,032 + +0.5 14,139 - -0.3 14,139 - -0.3 14,139 - -0.1 14,139 - -0.5 14,249 + GFF4921 0.29 -0.3 14,249 + GFF4921 0.29 -0.5 14,250 - GFF4921 0.30 +0.1 14,250 - GFF4921 0.30 +0.4 14,250 - GFF4921 0.30 -0.1 14,354 + GFF4921 0.57 +0.4 14,354 + GFF4921 0.57 +0.0 14,354 + GFF4921 0.57 +0.8 14,441 + GFF4921 0.80 -1.6 14,441 + GFF4921 0.80 +0.5 14,441 + GFF4921 0.80 +0.1 14,441 + GFF4921 0.80 -0.0 14,441 + GFF4921 0.80 +0.4 14,441 + GFF4921 0.80 +1.7 14,441 + GFF4921 0.80 -0.4 14,442 - GFF4921 0.80 +0.5 14,442 - GFF4921 0.80 -0.6 14,442 - GFF4921 0.80 +0.7 14,442 - GFF4921 0.80 -0.3 14,442 - GFF4921 0.80 +1.2 14,602 + -0.0 14,602 + -0.7 14,606 + +0.2 14,606 + -1.3 14,606 + +0.3 14,606 + -0.9 14,607 - +1.0 14,607 - -1.2 14,607 - +0.5 14,607 - -0.6 14,607 - -0.6 14,691 + -0.1 14,691 + -0.9 14,691 + -0.1 14,691 + +0.3 14,691 + -2.2 14,691 + +0.7 14,691 + +2.1 14,691 + +0.0 14,691 + +1.1 14,692 - -0.1 14,692 - +0.4 14,692 - -0.2 14,692 - +0.6 14,692 - -0.2 14,692 - +0.8 14,874 + GFF4922 0.35 -0.2 14,874 + GFF4922 0.35 -0.8 14,874 + GFF4922 0.35 +0.1 14,875 - GFF4922 0.35 -0.9 14,875 - GFF4922 0.35 +3.8 14,934 + GFF4922 0.47 +0.2 14,934 + GFF4922 0.47 +0.1 14,934 + GFF4922 0.47 -0.3 14,934 + GFF4922 0.47 -0.1 14,934 + GFF4922 0.47 -0.1 14,935 - GFF4922 0.47 -0.4 14,935 - GFF4922 0.47 +0.8 14,935 - GFF4922 0.47 +0.8 15,072 + GFF4922 0.75 -0.3 15,072 + GFF4922 0.75 +2.1 15,072 + GFF4922 0.75 +0.4 15,072 + GFF4922 0.75 +0.3 15,072 + GFF4922 0.75 +0.0 15,072 + GFF4922 0.75 +0.5 15,072 + GFF4922 0.75 +0.9 15,072 + GFF4922 0.75 -0.3 15,072 + GFF4922 0.75 -0.8 15,072 + GFF4922 0.75 -0.3 15,072 + GFF4922 0.75 -0.0 15,072 + GFF4922 0.75 -0.2 15,072 + GFF4922 0.75 +0.1 15,072 + GFF4922 0.75 +0.7 15,072 + GFF4922 0.75 +0.6 15,072 + GFF4922 0.75 +0.8 15,072 + GFF4922 0.75 +0.5 15,072 + GFF4922 0.75 +1.3 15,072 + GFF4922 0.75 +0.9 15,073 - GFF4922 0.75 -0.2 15,073 - GFF4922 0.75 -0.4 15,073 - GFF4922 0.75 +0.4 15,073 - GFF4922 0.75 +0.2 15,073 - GFF4922 0.75 -0.1 15,073 - GFF4922 0.75 +0.0 15,084 + GFF4922 0.77 -0.9 15,084 + GFF4922 0.77 -0.5 15,084 + GFF4922 0.77 +0.3 15,085 - GFF4922 0.78 -0.8 15,147 + -1.2 15,147 + -0.8 15,147 + +4.9 15,147 + -0.6 15,147 + +0.1 15,147 + -1.2 15,147 + +1.3 15,148 - -0.1 15,148 - +0.2 15,148 - -0.4 15,148 - +0.7 15,148 - -0.6 15,148 - -1.0 15,148 - +0.1 15,148 - +0.0 15,148 - +0.3 15,370 + GFF4923 0.29 +0.5 15,370 + GFF4923 0.29 -0.5 15,370 + GFF4923 0.29 +0.5 15,371 - GFF4923 0.29 -1.1 15,371 - GFF4923 0.29 -0.9 15,371 - GFF4923 0.29 -0.5 15,371 - GFF4923 0.29 -0.4 15,371 - GFF4923 0.29 +0.2 15,371 - GFF4923 0.29 +0.7 15,371 - GFF4923 0.29 +0.1
Or see this region's nucleotide sequence