Strain Fitness in Variovorax sp. SCN45 around GFF4666

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
21,737	-		GFF4664	0.45	+0.2
21,737	-		GFF4664	0.45	-1.6
21,737	-		GFF4664	0.45	+0.6
21,835	+		GFF4664	0.61	-0.4
21,835	+		GFF4664	0.61	+0.2
21,835	+		GFF4664	0.61	+0.2
21,835	+		GFF4664	0.61	-0.3
21,836	-		GFF4664	0.61	-1.3
21,836	-		GFF4664	0.61	-1.0
21,836	-		GFF4664	0.61	+0.0
21,836	-		GFF4664	0.61	-0.2
21,836	-		GFF4664	0.61	-0.0
21,858	+		GFF4664	0.65	-0.4
21,858	+		GFF4664	0.65	-0.1
21,858	+		GFF4664	0.65	+0.4
21,859	-		GFF4664	0.65	-0.7
21,859	-		GFF4664	0.65	+0.3
21,859	-		GFF4664	0.65	-0.0
21,859	-		GFF4664	0.65	-1.1
21,859	-		GFF4664	0.65	-0.3
21,859	-		GFF4664	0.65	-0.3
21,859	-		GFF4664	0.65	+0.4
21,870	+		GFF4664	0.67	-0.8
21,870	+		GFF4664	0.67	-1.2
21,870	+		GFF4664	0.67	-0.1
21,870	+		GFF4664	0.67	-0.7
21,871	-		GFF4664	0.67	+0.0
21,871	-		GFF4664	0.67	-1.0
21,922	+		GFF4664	0.75	+0.5
21,922	+		GFF4664	0.75	-0.3
21,922	+		GFF4664	0.75	+0.7
21,923	-		GFF4664	0.75	+0.4
21,923	-		GFF4664	0.75	-2.3
21,923	-		GFF4664	0.75	+0.7
21,923	-		GFF4664	0.75	-0.1
21,923	-		GFF4664	0.75	-0.7
21,923	-		GFF4664	0.75	-0.2
21,923	-		GFF4664	0.75	+0.2
21,980	+		GFF4664	0.85	+0.1
21,980	+		GFF4664	0.85	+0.4
21,981	-		GFF4664	0.85	-0.3
21,981	-		GFF4664	0.85	-1.4
21,981	-		GFF4664	0.85	+1.1
21,983	+		GFF4664	0.85	-0.8
21,983	+		GFF4664	0.85	-0.5
21,983	+		GFF4664	0.85	-0.4
21,984	-		GFF4664	0.85	+0.6
21,984	-		GFF4664	0.85	-0.1
22,233	+				+0.0
22,233	+				-0.1
22,233	+				-0.3
22,234	-				-0.3
22,234	-				-1.3
22,234	-				+0.7
22,234	-				-0.4
22,234	-				-1.0
22,245	+				-0.4
22,246	-				-1.0
22,246	-				-0.5
22,342	+				-0.4
22,346	+				-0.5
22,346	+				-0.7
22,346	+				-0.1
22,346	+				+0.2
22,346	+				-0.3
22,346	+				-0.4
22,346	+				+0.0
22,346	+				-0.3
22,346	+				-0.8
22,346	+				+0.0
22,346	+				+1.5
22,346	+				+0.2
22,346	+				+0.3
22,346	+				-0.8
22,346	+				-0.6
22,346	+				-0.1
22,346	+				-0.5
22,346	+				+0.1
22,346	+				+0.6
22,346	+				-1.6
22,346	+				+0.1
22,347	-				-0.0
22,347	-				+0.7
22,347	-				-0.3
22,347	-				-0.7
22,347	-				-0.7
22,347	-				+0.2
22,347	-				-0.3
22,347	-				-1.5
22,347	-				-0.3
22,347	-				-0.2
22,347	-				-0.0
22,347	-				+0.4
22,347	-				+0.3
22,347	-				-1.0
22,371	-				+0.4
22,396	+				-0.0
22,397	-				-1.0
22,397	-				-0.4
22,412	+				+0.4
22,450	-		GFF4665	0.19	+0.2
22,450	-		GFF4665	0.19	+0.7
22,482	+		GFF4665	0.35	-1.6
22,483	-		GFF4665	0.35	-0.1
22,483	-		GFF4665	0.35	-0.3
22,513	+		GFF4665	0.50	-0.1
22,514	-		GFF4665	0.50	-1.5
22,551	+		GFF4665	0.69	+0.3
22,552	-		GFF4665	0.69	-0.6
22,680	-				+0.5
22,680	-				-0.1
22,688	+				+0.1
22,688	+				-0.3
22,688	+				-0.1
22,688	+				+1.1
22,688	+				+0.5
22,688	+				-0.1
22,688	+				-0.1
22,688	+				-1.0
22,688	+				+0.2
22,688	+				-0.1
22,688	+				-0.9
22,689	-				-0.6
22,689	-				+0.3
22,689	-				-1.4
22,689	-				-0.0
22,689	-				+0.4
22,689	-				-0.4
22,689	-				+0.2
22,689	-				+0.2
22,689	-				-1.0
22,689	-				-0.3
22,689	-				-0.1
22,689	-				-0.8
22,689	-				-0.5
22,689	-				+0.3
22,788	+				-0.3
22,788	+				-0.1
22,788	+				+0.7
22,788	+				+0.4
22,789	-				-0.0
22,789	-				-1.3
22,789	-				-0.1
22,862	+		GFF4666	0.13	-2.5
22,862	+		GFF4666	0.13	+0.1
22,862	+		GFF4666	0.13	-0.6
22,863	-		GFF4666	0.13	-0.5
22,863	-		GFF4666	0.13	-0.2
22,863	-		GFF4666	0.13	+0.2
22,863	-		GFF4666	0.13	+0.6
22,863	-		GFF4666	0.13	+1.6
22,886	+		GFF4666	0.15	+0.7
22,886	+		GFF4666	0.15	+0.2
22,886	+		GFF4666	0.15	+0.0
22,886	+		GFF4666	0.15	+0.2
22,886	+		GFF4666	0.15	+2.3
22,886	+		GFF4666	0.15	+1.7
22,887	-		GFF4666	0.15	-0.2
23,313	-		GFF4666	0.47	-1.7
23,414	+		GFF4666	0.55	-0.2
23,414	+		GFF4666	0.55	+0.1
23,415	-		GFF4666	0.55	+0.3
23,415	-		GFF4666	0.55	-1.2
23,415	-		GFF4666	0.55	+2.7
23,415	-		GFF4666	0.55	+0.1
23,415	-		GFF4666	0.55	-0.6
23,477	+		GFF4666	0.59	+1.0
23,477	+		GFF4666	0.59	-0.2
23,477	+		GFF4666	0.59	-0.1
23,478	-		GFF4666	0.60	-0.3
23,513	+		GFF4666	0.62	+0.4
23,513	+		GFF4666	0.62	-0.0
23,513	+		GFF4666	0.62	+0.2
23,513	+		GFF4666	0.62	+0.1
23,513	+		GFF4666	0.62	-0.8
23,514	-		GFF4666	0.62	+0.3
23,514	-		GFF4666	0.62	-0.2
23,514	-		GFF4666	0.62	-0.8
23,585	+		GFF4666	0.68	+0.5
23,585	+		GFF4666	0.68	-1.0
23,585	+		GFF4666	0.68	+0.9
23,585	+		GFF4666	0.68	-0.1
23,586	-		GFF4666	0.68	+0.5
23,624	+		GFF4666	0.71	-0.8
23,694	-		GFF4666	0.76	-0.9
23,867	+		GFF4666	0.89	+0.4
23,867	+		GFF4666	0.89	-0.8
23,867	+		GFF4666	0.89	-0.8
23,867	+		GFF4666	0.89	-0.4
23,867	+		GFF4666	0.89	-1.3
23,867	+		GFF4666	0.89	+0.0
23,868	-		GFF4666	0.89	+0.2
23,868	-		GFF4666	0.89	+1.2
23,868	-		GFF4666	0.89	+0.2
23,868	-		GFF4666	0.89	-0.1
23,951	+				+0.2
23,951	+				-0.0
23,951	+				+0.3
23,951	+				-0.7
23,952	-				-0.2
23,952	-				+0.2
23,952	-				-0.1
23,952	-				+0.2
23,952	-				-1.3
23,969	+				+0.3
24,015	+				-0.8
24,015	+				-0.8
24,015	+				-0.4
24,015	+				-0.0
24,015	+				-0.5
24,015	+				-0.9
24,015	+				+0.6
24,015	+				-0.4
24,015	+				+0.3
24,015	+				-0.5
24,015	+				-0.0
24,015	+				+0.2
24,015	+				-0.6
24,015	+				+0.2
24,016	-				-1.7
24,016	-				+0.7
24,016	-				+0.4
24,016	-				-1.6
24,016	-				-0.8
24,016	-				-0.8
24,016	-				-1.3
24,016	-				-0.5
24,016	-				-0.8
24,016	-				-0.8
24,016	-				-0.1
24,016	-				-0.5
24,016	-				+0.2
24,016	-				-0.8
24,016	-				-0.1
24,016	-				-0.6
24,064	-				+0.6
24,089	-				-0.1
24,634	+		GFF4667	0.60	+0.4
24,635	-		GFF4667	0.60	-0.5
24,635	-		GFF4667	0.60	+0.4
24,680	-		GFF4667	0.64	-1.3
24,680	-		GFF4667	0.64	+0.2
24,896	-		GFF4667	0.86	+0.4