Strain Fitness in Variovorax sp. SCN45 around GFF4568

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4567 and GFF4568 are separated by 139 nucleotidesGFF4568 and GFF4569 are separated by 31 nucleotides GFF4567 - Transcriptional regulator, LysR family, at 203,486 to 204,379 GFF4567 GFF4568 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 204,519 to 206,654 GFF4568 GFF4569 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 206,686 to 207,876 GFF4569 Position (kb) 204 205 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.565 kb on + strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.566 kb on - strandat 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.658 kb on + strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.659 kb on - strand, within GFF4567at 203.772 kb on + strand, within GFF4567at 203.871 kb on + strand, within GFF4567at 203.872 kb on - strand, within GFF4567at 203.895 kb on + strand, within GFF4567at 203.895 kb on + strand, within GFF4567at 204.186 kb on + strand, within GFF4567at 204.186 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.279 kb on + strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.280 kb on - strand, within GFF4567at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.910 kb on + strand, within GFF4568at 204.911 kb on - strand, within GFF4568at 204.911 kb on - strand, within GFF4568at 205.104 kb on + strand, within GFF4568at 205.104 kb on + strand, within GFF4568at 205.105 kb on - strand, within GFF4568at 205.572 kb on + strand, within GFF4568at 205.572 kb on + strand, within GFF4568at 205.573 kb on - strand, within GFF4568at 205.573 kb on - strand, within GFF4568at 205.573 kb on - strand, within GFF4568at 205.573 kb on - strand, within GFF4568at 205.573 kb on - strand, within GFF4568at 205.653 kb on + strand, within GFF4568at 205.653 kb on + strand, within GFF4568at 205.653 kb on + strand, within GFF4568at 205.653 kb on + strand, within GFF4568at 205.653 kb on + strand, within GFF4568at 205.654 kb on - strand, within GFF4568at 205.654 kb on - strand, within GFF4568at 205.782 kb on + strand, within GFF4568at 205.782 kb on + strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 205.783 kb on - strand, within GFF4568at 206.055 kb on + strand, within GFF4568at 206.056 kb on - strand, within GFF4568at 206.188 kb on - strand, within GFF4568at 206.250 kb on + strand, within GFF4568at 206.251 kb on - strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.253 kb on + strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.254 kb on - strand, within GFF4568at 206.379 kb on + strand, within GFF4568at 206.379 kb on + strand, within GFF4568at 206.380 kb on - strand, within GFF4568at 206.380 kb on - strand, within GFF4568at 206.466 kb on + strandat 206.466 kb on + strandat 206.467 kb on - strandat 206.467 kb on - strandat 206.472 kb on + strandat 206.508 kb on + strandat 206.508 kb on + strandat 206.509 kb on - strandat 206.509 kb on - strandat 206.652 kb on + strandat 206.653 kb on - strandat 206.653 kb on - strandat 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.127 kb on + strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.128 kb on - strand, within GFF4569at 207.169 kb on + strand, within GFF4569at 207.170 kb on - strand, within GFF4569at 207.170 kb on - strand, within GFF4569at 207.250 kb on + strand, within GFF4569at 207.251 kb on - strand, within GFF4569at 207.370 kb on + strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569at 207.371 kb on - strand, within GFF4569

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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203,565 + +0.6
203,565 + -0.7
203,565 + -0.7
203,565 + -0.1
203,565 + +0.3
203,565 + -0.4
203,565 + -0.2
203,566 - +2.5
203,566 - -0.4
203,566 - -1.7
203,566 - +1.2
203,566 - +0.0
203,566 - -0.6
203,566 - -0.1
203,566 - -0.5
203,566 - -0.4
203,566 - -0.2
203,566 - +0.3
203,566 - +0.3
203,658 + GFF4567 0.19 +0.3
203,658 + GFF4567 0.19 +0.1
203,658 + GFF4567 0.19 -1.2
203,658 + GFF4567 0.19 -0.5
203,658 + GFF4567 0.19 -0.5
203,658 + GFF4567 0.19 -0.6
203,658 + GFF4567 0.19 +1.3
203,658 + GFF4567 0.19 -0.1
203,658 + GFF4567 0.19 -0.3
203,658 + GFF4567 0.19 -0.2
203,659 - GFF4567 0.19 +0.2
203,659 - GFF4567 0.19 -0.1
203,659 - GFF4567 0.19 +0.5
203,659 - GFF4567 0.19 +0.0
203,659 - GFF4567 0.19 -1.3
203,659 - GFF4567 0.19 -0.3
203,772 + GFF4567 0.32 +0.4
203,871 + GFF4567 0.43 +2.5
203,872 - GFF4567 0.43 -0.9
203,895 + GFF4567 0.46 +0.2
203,895 + GFF4567 0.46 +0.9
204,186 + GFF4567 0.78 -1.2
204,186 + GFF4567 0.78 -0.4
204,279 + GFF4567 0.89 +1.5
204,279 + GFF4567 0.89 -1.4
204,279 + GFF4567 0.89 -0.9
204,279 + GFF4567 0.89 -3.4
204,279 + GFF4567 0.89 -0.9
204,279 + GFF4567 0.89 +0.7
204,280 - GFF4567 0.89 -0.2
204,280 - GFF4567 0.89 -1.2
204,280 - GFF4567 0.89 +0.2
204,280 - GFF4567 0.89 +0.2
204,910 + GFF4568 0.18 -0.9
204,910 + GFF4568 0.18 +0.1
204,910 + GFF4568 0.18 -0.6
204,910 + GFF4568 0.18 -2.0
204,910 + GFF4568 0.18 -1.2
204,910 + GFF4568 0.18 +0.5
204,910 + GFF4568 0.18 -0.8
204,911 - GFF4568 0.18 -0.9
204,911 - GFF4568 0.18 -1.3
205,104 + GFF4568 0.27 -1.3
205,104 + GFF4568 0.27 -0.3
205,105 - GFF4568 0.27 +3.7
205,572 + GFF4568 0.49 -1.2
205,572 + GFF4568 0.49 -1.4
205,573 - GFF4568 0.49 +0.9
205,573 - GFF4568 0.49 -0.6
205,573 - GFF4568 0.49 -0.5
205,573 - GFF4568 0.49 +0.5
205,573 - GFF4568 0.49 +0.3
205,653 + GFF4568 0.53 -0.5
205,653 + GFF4568 0.53 +0.1
205,653 + GFF4568 0.53 +0.7
205,653 + GFF4568 0.53 +0.3
205,653 + GFF4568 0.53 -1.6
205,654 - GFF4568 0.53 -0.8
205,654 - GFF4568 0.53 -1.0
205,782 + GFF4568 0.59 -0.2
205,782 + GFF4568 0.59 -1.0
205,783 - GFF4568 0.59 -0.4
205,783 - GFF4568 0.59 -0.4
205,783 - GFF4568 0.59 -0.2
205,783 - GFF4568 0.59 -1.0
205,783 - GFF4568 0.59 -1.0
206,055 + GFF4568 0.72 -0.9
206,056 - GFF4568 0.72 -0.6
206,188 - GFF4568 0.78 -0.5
206,250 + GFF4568 0.81 -1.5
206,251 - GFF4568 0.81 -1.1
206,253 + GFF4568 0.81 -0.1
206,253 + GFF4568 0.81 -0.7
206,253 + GFF4568 0.81 -0.4
206,253 + GFF4568 0.81 -0.3
206,253 + GFF4568 0.81 -0.5
206,254 - GFF4568 0.81 +0.1
206,254 - GFF4568 0.81 -0.1
206,254 - GFF4568 0.81 -0.4
206,254 - GFF4568 0.81 -0.5
206,254 - GFF4568 0.81 -1.4
206,379 + GFF4568 0.87 +0.1
206,379 + GFF4568 0.87 +0.8
206,380 - GFF4568 0.87 +0.1
206,380 - GFF4568 0.87 +0.0
206,466 + -0.4
206,466 + -1.9
206,467 - -0.7
206,467 - +0.5
206,472 + +0.8
206,508 + -0.2
206,508 + -0.4
206,509 - -0.8
206,509 - +0.5
206,652 + +0.5
206,653 - -1.6
206,653 - -0.5
207,127 + GFF4569 0.37 -0.1
207,127 + GFF4569 0.37 -2.2
207,127 + GFF4569 0.37 -0.5
207,127 + GFF4569 0.37 +0.1
207,127 + GFF4569 0.37 +0.8
207,127 + GFF4569 0.37 +0.2
207,127 + GFF4569 0.37 +0.5
207,127 + GFF4569 0.37 +0.3
207,127 + GFF4569 0.37 -0.1
207,127 + GFF4569 0.37 +0.6
207,127 + GFF4569 0.37 -0.6
207,128 - GFF4569 0.37 +0.1
207,128 - GFF4569 0.37 -0.8
207,128 - GFF4569 0.37 -0.1
207,128 - GFF4569 0.37 +0.9
207,128 - GFF4569 0.37 -0.3
207,169 + GFF4569 0.41 +1.1
207,170 - GFF4569 0.41 -0.2
207,170 - GFF4569 0.41 -1.8
207,250 + GFF4569 0.47 -0.0
207,251 - GFF4569 0.47 -0.6
207,370 + GFF4569 0.57 +1.1
207,371 - GFF4569 0.58 +0.2
207,371 - GFF4569 0.58 -0.7
207,371 - GFF4569 0.58 -0.6
207,371 - GFF4569 0.58 +1.1
207,371 - GFF4569 0.58 -0.2
207,371 - GFF4569 0.58 -0.9

Or see this region's nucleotide sequence