Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4549 and GFF4550 are separated by 36 nucleotides GFF4550 and GFF4551 overlap by 1 nucleotides GFF4551 and GFF4552 are separated by 8 nucleotides
GFF4549 - Cysteine synthase (EC 2.5.1.47), at 186,142 to 187,062
GFF4549
GFF4550 - NAD(FAD)-utilizing dehydrogenase, sll0175 homolog, at 187,099 to 188,784
GFF4550
GFF4551 - Putative preQ0 transporter YhhQ, at 188,784 to 189,353
GFF4551
GFF4552 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 189,362 to 189,991
GFF4552
Position (kb) 187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 186.400 kb on + strand, within GFF4549 at 186.400 kb on + strand, within GFF4549 at 186.401 kb on - strand, within GFF4549 at 186.401 kb on - strand, within GFF4549 at 186.401 kb on - strand, within GFF4549 at 186.401 kb on - strand, within GFF4549 at 186.401 kb on - strand, within GFF4549 at 186.401 kb on - strand, within GFF4549 at 186.463 kb on + strand, within GFF4549 at 187.012 kb on + strand at 187.012 kb on + strand at 187.012 kb on + strand at 187.013 kb on - strand at 187.013 kb on - strand at 187.030 kb on + strand at 187.030 kb on + strand at 187.030 kb on + strand at 187.030 kb on + strand at 187.030 kb on + strand at 187.031 kb on - strand at 187.031 kb on - strand at 187.031 kb on - strand at 187.031 kb on - strand at 187.031 kb on - strand at 187.031 kb on - strand at 187.031 kb on - strand at 187.116 kb on + strand at 187.116 kb on + strand at 187.116 kb on + strand at 187.116 kb on + strand at 187.117 kb on - strand at 187.117 kb on - strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.120 kb on + strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.121 kb on - strand at 187.129 kb on + strand at 187.129 kb on + strand at 187.252 kb on + strand at 187.252 kb on + strand at 187.252 kb on + strand at 187.252 kb on + strand at 187.252 kb on + strand at 187.252 kb on + strand at 187.252 kb on + strand at 187.253 kb on - strand at 187.253 kb on - strand at 187.253 kb on - strand at 187.253 kb on - strand at 187.253 kb on - strand at 187.253 kb on - strand at 187.297 kb on + strand, within GFF4550 at 187.297 kb on + strand, within GFF4550 at 187.297 kb on + strand, within GFF4550 at 187.297 kb on + strand, within GFF4550 at 187.297 kb on + strand, within GFF4550 at 187.297 kb on + strand, within GFF4550 at 187.297 kb on + strand, within GFF4550 at 187.297 kb on + strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.298 kb on - strand, within GFF4550 at 187.396 kb on + strand, within GFF4550 at 187.396 kb on + strand, within GFF4550 at 187.397 kb on - strand, within GFF4550 at 187.397 kb on - strand, within GFF4550 at 187.645 kb on + strand, within GFF4550 at 187.645 kb on + strand, within GFF4550 at 187.645 kb on + strand, within GFF4550 at 187.645 kb on + strand, within GFF4550 at 187.645 kb on + strand, within GFF4550 at 187.645 kb on + strand, within GFF4550 at 187.646 kb on - strand, within GFF4550 at 187.646 kb on - strand, within GFF4550 at 187.729 kb on + strand, within GFF4550 at 187.729 kb on + strand, within GFF4550 at 187.729 kb on + strand, within GFF4550 at 187.729 kb on + strand, within GFF4550 at 187.730 kb on - strand, within GFF4550 at 187.730 kb on - strand, within GFF4550 at 187.730 kb on - strand, within GFF4550 at 187.848 kb on + strand, within GFF4550 at 188.104 kb on + strand, within GFF4550 at 188.104 kb on + strand, within GFF4550 at 188.104 kb on + strand, within GFF4550 at 188.104 kb on + strand, within GFF4550 at 188.104 kb on + strand, within GFF4550 at 188.105 kb on - strand, within GFF4550 at 188.105 kb on - strand, within GFF4550 at 188.105 kb on - strand, within GFF4550 at 188.105 kb on - strand, within GFF4550 at 188.143 kb on + strand, within GFF4550 at 188.143 kb on + strand, within GFF4550 at 188.143 kb on + strand, within GFF4550 at 188.143 kb on + strand, within GFF4550 at 188.143 kb on + strand, within GFF4550 at 188.144 kb on - strand, within GFF4550 at 188.144 kb on - strand, within GFF4550 at 188.144 kb on - strand, within GFF4550 at 188.144 kb on - strand, within GFF4550 at 188.144 kb on - strand, within GFF4550 at 188.227 kb on + strand, within GFF4550 at 188.227 kb on + strand, within GFF4550 at 188.228 kb on - strand, within GFF4550 at 188.288 kb on - strand, within GFF4550 at 188.365 kb on + strand, within GFF4550 at 188.443 kb on + strand, within GFF4550 at 188.443 kb on + strand, within GFF4550 at 188.443 kb on + strand, within GFF4550 at 188.443 kb on + strand, within GFF4550 at 188.443 kb on + strand, within GFF4550 at 188.444 kb on - strand, within GFF4550 at 188.444 kb on - strand, within GFF4550 at 188.444 kb on - strand, within GFF4550 at 188.444 kb on - strand, within GFF4550 at 188.491 kb on + strand, within GFF4550 at 188.491 kb on + strand, within GFF4550 at 188.491 kb on + strand, within GFF4550 at 188.492 kb on - strand, within GFF4550 at 188.677 kb on + strand at 188.678 kb on - strand at 188.928 kb on + strand, within GFF4551 at 188.928 kb on + strand, within GFF4551 at 188.928 kb on + strand, within GFF4551 at 188.929 kb on - strand, within GFF4551 at 188.929 kb on - strand, within GFF4551 at 188.929 kb on - strand, within GFF4551 at 188.929 kb on - strand, within GFF4551 at 188.929 kb on - strand, within GFF4551 at 188.929 kb on - strand, within GFF4551 at 188.940 kb on + strand, within GFF4551 at 188.940 kb on + strand, within GFF4551 at 188.940 kb on + strand, within GFF4551 at 188.940 kb on + strand, within GFF4551 at 188.940 kb on + strand, within GFF4551 at 188.940 kb on + strand, within GFF4551 at 188.941 kb on - strand, within GFF4551 at 188.941 kb on - strand, within GFF4551 at 188.941 kb on - strand, within GFF4551 at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.392 kb on + strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.393 kb on - strand at 189.509 kb on + strand, within GFF4552 at 189.533 kb on + strand, within GFF4552 at 189.533 kb on + strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552 at 189.534 kb on - strand, within GFF4552
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 186,400 + GFF4549 0.28 -1.0 186,400 + GFF4549 0.28 +0.6 186,401 - GFF4549 0.28 +0.2 186,401 - GFF4549 0.28 -0.4 186,401 - GFF4549 0.28 -0.9 186,401 - GFF4549 0.28 -0.1 186,401 - GFF4549 0.28 +0.1 186,401 - GFF4549 0.28 -0.9 186,463 + GFF4549 0.35 +0.1 187,012 + +0.5 187,012 + +0.2 187,012 + -0.5 187,013 - +0.6 187,013 - -0.5 187,030 + +0.4 187,030 + -0.1 187,030 + +0.5 187,030 + -1.3 187,030 + -0.0 187,031 - -0.3 187,031 - -0.7 187,031 - -0.6 187,031 - -0.7 187,031 - +0.9 187,031 - +0.6 187,031 - +0.0 187,116 + -0.5 187,116 + -0.6 187,116 + -1.0 187,116 + -0.1 187,117 - -0.6 187,117 - -1.2 187,120 + -0.8 187,120 + -0.1 187,120 + -0.9 187,120 + -0.2 187,120 + -1.0 187,120 + -0.5 187,120 + +0.5 187,120 + -1.0 187,120 + -1.1 187,120 + -0.2 187,120 + -0.8 187,120 + -0.6 187,121 - -0.5 187,121 - -0.9 187,121 - -1.5 187,121 - -0.2 187,121 - +0.8 187,121 - -0.5 187,121 - -0.7 187,121 - +1.5 187,121 - +0.4 187,121 - -0.9 187,129 + -1.8 187,129 + -0.5 187,252 + -1.1 187,252 + -0.4 187,252 + -0.0 187,252 + -0.5 187,252 + -0.3 187,252 + -1.1 187,252 + -0.5 187,253 - +0.3 187,253 - -1.0 187,253 - -0.2 187,253 - -1.2 187,253 - +0.8 187,253 - +0.1 187,297 + GFF4550 0.12 -0.8 187,297 + GFF4550 0.12 -0.1 187,297 + GFF4550 0.12 +0.4 187,297 + GFF4550 0.12 -0.2 187,297 + GFF4550 0.12 -0.9 187,297 + GFF4550 0.12 -0.3 187,297 + GFF4550 0.12 -0.5 187,297 + GFF4550 0.12 +0.2 187,298 - GFF4550 0.12 +0.3 187,298 - GFF4550 0.12 -0.2 187,298 - GFF4550 0.12 -0.4 187,298 - GFF4550 0.12 +0.4 187,298 - GFF4550 0.12 +1.0 187,298 - GFF4550 0.12 +0.1 187,298 - GFF4550 0.12 +0.3 187,298 - GFF4550 0.12 -0.4 187,298 - GFF4550 0.12 -0.0 187,298 - GFF4550 0.12 +0.3 187,298 - GFF4550 0.12 +2.1 187,298 - GFF4550 0.12 +0.7 187,298 - GFF4550 0.12 -0.4 187,298 - GFF4550 0.12 +3.4 187,396 + GFF4550 0.18 -0.6 187,396 + GFF4550 0.18 +0.8 187,397 - GFF4550 0.18 +1.3 187,397 - GFF4550 0.18 +1.1 187,645 + GFF4550 0.32 -0.2 187,645 + GFF4550 0.32 -0.2 187,645 + GFF4550 0.32 +0.2 187,645 + GFF4550 0.32 +0.9 187,645 + GFF4550 0.32 -0.7 187,645 + GFF4550 0.32 +0.2 187,646 - GFF4550 0.32 -0.4 187,646 - GFF4550 0.32 +0.2 187,729 + GFF4550 0.37 -1.2 187,729 + GFF4550 0.37 -0.1 187,729 + GFF4550 0.37 +0.9 187,729 + GFF4550 0.37 +0.1 187,730 - GFF4550 0.37 -0.5 187,730 - GFF4550 0.37 -0.3 187,730 - GFF4550 0.37 -0.2 187,848 + GFF4550 0.44 -1.4 188,104 + GFF4550 0.60 -0.2 188,104 + GFF4550 0.60 +1.2 188,104 + GFF4550 0.60 -1.0 188,104 + GFF4550 0.60 -0.3 188,104 + GFF4550 0.60 -0.8 188,105 - GFF4550 0.60 -0.4 188,105 - GFF4550 0.60 -0.3 188,105 - GFF4550 0.60 -0.5 188,105 - GFF4550 0.60 -0.3 188,143 + GFF4550 0.62 -0.1 188,143 + GFF4550 0.62 +0.9 188,143 + GFF4550 0.62 +2.1 188,143 + GFF4550 0.62 -0.9 188,143 + GFF4550 0.62 +0.5 188,144 - GFF4550 0.62 +0.5 188,144 - GFF4550 0.62 -0.2 188,144 - GFF4550 0.62 -1.3 188,144 - GFF4550 0.62 +0.1 188,144 - GFF4550 0.62 +4.1 188,227 + GFF4550 0.67 -0.8 188,227 + GFF4550 0.67 -0.2 188,228 - GFF4550 0.67 +0.1 188,288 - GFF4550 0.71 -0.4 188,365 + GFF4550 0.75 -0.1 188,443 + GFF4550 0.80 -0.2 188,443 + GFF4550 0.80 -1.0 188,443 + GFF4550 0.80 -2.7 188,443 + GFF4550 0.80 -0.0 188,443 + GFF4550 0.80 -0.6 188,444 - GFF4550 0.80 -0.6 188,444 - GFF4550 0.80 -0.5 188,444 - GFF4550 0.80 +0.7 188,444 - GFF4550 0.80 +0.3 188,491 + GFF4550 0.83 -0.3 188,491 + GFF4550 0.83 -1.0 188,491 + GFF4550 0.83 +0.3 188,492 - GFF4550 0.83 +0.1 188,677 + +0.4 188,678 - +1.7 188,928 + GFF4551 0.25 +0.2 188,928 + GFF4551 0.25 -0.2 188,928 + GFF4551 0.25 -0.8 188,929 - GFF4551 0.25 +1.1 188,929 - GFF4551 0.25 -0.3 188,929 - GFF4551 0.25 -0.9 188,929 - GFF4551 0.25 -0.1 188,929 - GFF4551 0.25 -1.1 188,929 - GFF4551 0.25 -2.3 188,940 + GFF4551 0.27 -0.5 188,940 + GFF4551 0.27 +0.3 188,940 + GFF4551 0.27 +0.5 188,940 + GFF4551 0.27 -1.5 188,940 + GFF4551 0.27 -0.8 188,940 + GFF4551 0.27 -0.4 188,941 - GFF4551 0.28 -0.3 188,941 - GFF4551 0.28 -0.0 188,941 - GFF4551 0.28 +0.6 189,392 + -0.1 189,392 + -1.0 189,392 + -1.3 189,392 + +0.9 189,392 + +0.3 189,392 + -1.3 189,392 + -0.1 189,393 - -0.9 189,393 - -1.2 189,393 - -0.9 189,393 - +0.1 189,393 - -0.0 189,393 - -0.2 189,509 + GFF4552 0.23 -0.0 189,533 + GFF4552 0.27 +0.1 189,533 + GFF4552 0.27 +0.2 189,534 - GFF4552 0.27 -0.7 189,534 - GFF4552 0.27 +0.5 189,534 - GFF4552 0.27 -0.7 189,534 - GFF4552 0.27 +0.2 189,534 - GFF4552 0.27 -1.9 189,534 - GFF4552 0.27 -1.6 189,534 - GFF4552 0.27 -0.7 189,534 - GFF4552 0.27 -0.6 189,534 - GFF4552 0.27 -2.4
Or see this region's nucleotide sequence