Strain Fitness in Variovorax sp. SCN45 around GFF4509

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4507 and GFF4508 are separated by 15 nucleotidesGFF4508 and GFF4509 are separated by 92 nucleotidesGFF4509 and GFF4510 are separated by 39 nucleotides GFF4507 - no description, at 150,098 to 150,547 GFF4507 GFF4508 - no description, at 150,563 to 151,051 GFF4508 GFF4509 - no description, at 151,144 to 151,398 GFF4509 GFF4510 - hypothetical protein, at 151,438 to 152,877 GFF4510 Position (kb) 151 152Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 150.164 kb on + strand, within GFF4507at 150.164 kb on + strand, within GFF4507at 150.164 kb on + strand, within GFF4507at 150.164 kb on + strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.165 kb on - strand, within GFF4507at 150.167 kb on - strand, within GFF4507at 150.167 kb on - strand, within GFF4507at 150.258 kb on - strand, within GFF4507at 150.258 kb on - strand, within GFF4507at 150.258 kb on - strand, within GFF4507at 150.261 kb on + strand, within GFF4507at 150.261 kb on + strand, within GFF4507at 150.261 kb on + strand, within GFF4507at 150.262 kb on - strand, within GFF4507at 150.262 kb on - strand, within GFF4507at 150.262 kb on - strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.275 kb on + strand, within GFF4507at 150.276 kb on - strand, within GFF4507at 150.276 kb on - strand, within GFF4507at 150.560 kb on + strandat 150.560 kb on + strandat 150.560 kb on + strandat 150.560 kb on + strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.561 kb on - strandat 150.584 kb on + strandat 150.584 kb on + strandat 150.584 kb on + strandat 150.585 kb on - strandat 150.642 kb on + strand, within GFF4508at 150.643 kb on - strand, within GFF4508at 150.674 kb on + strand, within GFF4508at 150.674 kb on + strand, within GFF4508at 150.675 kb on - strand, within GFF4508at 150.769 kb on - strand, within GFF4508at 150.881 kb on + strand, within GFF4508at 150.882 kb on - strand, within GFF4508at 150.882 kb on - strand, within GFF4508at 150.899 kb on + strand, within GFF4508at 150.899 kb on + strand, within GFF4508at 150.900 kb on - strand, within GFF4508at 150.900 kb on - strand, within GFF4508at 150.900 kb on - strand, within GFF4508at 150.923 kb on + strand, within GFF4508at 150.924 kb on - strand, within GFF4508at 151.171 kb on + strand, within GFF4509at 151.171 kb on + strand, within GFF4509at 151.171 kb on + strand, within GFF4509at 151.172 kb on - strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.258 kb on + strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.259 kb on - strand, within GFF4509at 151.307 kb on - strand, within GFF4509at 151.388 kb on - strandat 151.458 kb on + strandat 151.458 kb on + strandat 151.518 kb on - strandat 151.766 kb on + strand, within GFF4510at 151.766 kb on + strand, within GFF4510at 151.766 kb on + strand, within GFF4510at 151.767 kb on - strand, within GFF4510at 151.928 kb on + strand, within GFF4510at 151.928 kb on + strand, within GFF4510at 151.928 kb on + strand, within GFF4510at 151.928 kb on + strand, within GFF4510at 151.968 kb on - strand, within GFF4510at 152.239 kb on + strand, within GFF4510at 152.243 kb on + strand, within GFF4510at 152.243 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.300 kb on + strand, within GFF4510at 152.301 kb on - strand, within GFF4510at 152.351 kb on + strand, within GFF4510at 152.351 kb on + strand, within GFF4510

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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150,164 + GFF4507 0.15 -1.4
150,164 + GFF4507 0.15 -1.9
150,164 + GFF4507 0.15 +0.1
150,164 + GFF4507 0.15 -0.1
150,165 - GFF4507 0.15 -0.1
150,165 - GFF4507 0.15 -0.0
150,165 - GFF4507 0.15 -0.2
150,165 - GFF4507 0.15 +0.5
150,165 - GFF4507 0.15 +1.1
150,165 - GFF4507 0.15 -0.5
150,167 - GFF4507 0.15 +0.6
150,167 - GFF4507 0.15 -0.7
150,258 - GFF4507 0.36 +0.1
150,258 - GFF4507 0.36 +0.4
150,258 - GFF4507 0.36 +0.7
150,261 + GFF4507 0.36 +2.7
150,261 + GFF4507 0.36 +1.2
150,261 + GFF4507 0.36 +4.7
150,262 - GFF4507 0.36 -1.7
150,262 - GFF4507 0.36 +0.3
150,262 - GFF4507 0.36 -0.7
150,275 + GFF4507 0.39 -0.2
150,275 + GFF4507 0.39 +0.7
150,275 + GFF4507 0.39 -0.2
150,275 + GFF4507 0.39 -0.1
150,275 + GFF4507 0.39 -0.4
150,276 - GFF4507 0.40 +0.8
150,276 - GFF4507 0.40 +0.6
150,560 + +0.4
150,560 + -0.5
150,560 + -0.5
150,560 + -0.4
150,561 - +0.8
150,561 - +0.6
150,561 - -0.4
150,561 - -0.6
150,561 - +0.4
150,561 - +1.9
150,584 + +0.0
150,584 + +1.2
150,584 + +0.5
150,585 - -0.9
150,642 + GFF4508 0.16 +3.1
150,643 - GFF4508 0.16 -0.6
150,674 + GFF4508 0.23 -0.5
150,674 + GFF4508 0.23 +0.3
150,675 - GFF4508 0.23 +0.3
150,769 - GFF4508 0.42 -0.7
150,881 + GFF4508 0.65 +0.5
150,882 - GFF4508 0.65 +0.5
150,882 - GFF4508 0.65 -0.5
150,899 + GFF4508 0.69 -0.3
150,899 + GFF4508 0.69 +0.5
150,900 - GFF4508 0.69 -0.1
150,900 - GFF4508 0.69 -0.3
150,900 - GFF4508 0.69 +1.8
150,923 + GFF4508 0.74 +0.3
150,924 - GFF4508 0.74 +0.1
151,171 + GFF4509 0.11 +0.2
151,171 + GFF4509 0.11 +0.1
151,171 + GFF4509 0.11 +0.8
151,172 - GFF4509 0.11 +1.7
151,258 + GFF4509 0.45 +0.2
151,258 + GFF4509 0.45 +0.9
151,258 + GFF4509 0.45 +0.2
151,258 + GFF4509 0.45 +1.0
151,258 + GFF4509 0.45 -0.4
151,259 - GFF4509 0.45 -1.0
151,259 - GFF4509 0.45 +0.1
151,259 - GFF4509 0.45 -0.4
151,259 - GFF4509 0.45 +1.1
151,259 - GFF4509 0.45 -0.0
151,259 - GFF4509 0.45 +1.1
151,307 - GFF4509 0.64 -0.1
151,388 - +0.5
151,458 + -1.2
151,458 + +0.2
151,518 - -1.1
151,766 + GFF4510 0.23 -0.4
151,766 + GFF4510 0.23 -0.3
151,766 + GFF4510 0.23 +0.7
151,767 - GFF4510 0.23 +0.1
151,928 + GFF4510 0.34 +0.1
151,928 + GFF4510 0.34 -0.0
151,928 + GFF4510 0.34 -0.5
151,928 + GFF4510 0.34 -0.4
151,968 - GFF4510 0.37 +1.5
152,239 + GFF4510 0.56 -1.5
152,243 + GFF4510 0.56 -1.7
152,243 + GFF4510 0.56 -0.5
152,300 + GFF4510 0.60 +0.5
152,300 + GFF4510 0.60 -0.8
152,300 + GFF4510 0.60 -0.6
152,300 + GFF4510 0.60 -0.6
152,300 + GFF4510 0.60 -0.6
152,300 + GFF4510 0.60 -0.6
152,301 - GFF4510 0.60 -0.3
152,351 + GFF4510 0.63 +0.1
152,351 + GFF4510 0.63 -0.3

Or see this region's nucleotide sequence