Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4349 and GFF4350 overlap by 4 nucleotides GFF4350 and GFF4351 are separated by 18 nucleotides GFF4351 and GFF4352 are separated by 22 nucleotides
GFF4349 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 272,088 to 272,786
GFF4349
GFF4350 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 272,783 to 273,478
GFF4350
GFF4351 - Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1), at 273,497 to 274,678
GFF4351
GFF4352 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 274,701 to 276,257
GFF4352
Position (kb) 273
274
275 Strain fitness (log2 ratio) -1
0
1
2
3 at 272.939 kb on - strand, within GFF4350 at 273.692 kb on + strand, within GFF4351 at 273.805 kb on + strand, within GFF4351 at 274.118 kb on + strand, within GFF4351 at 274.119 kb on - strand, within GFF4351 at 274.119 kb on - strand, within GFF4351 at 274.163 kb on + strand, within GFF4351 at 274.163 kb on + strand, within GFF4351 at 274.163 kb on + strand, within GFF4351 at 274.164 kb on - strand, within GFF4351 at 274.164 kb on - strand, within GFF4351 at 274.166 kb on + strand, within GFF4351 at 274.229 kb on + strand, within GFF4351 at 274.320 kb on - strand, within GFF4351 at 274.397 kb on + strand, within GFF4351 at 274.415 kb on + strand, within GFF4351 at 274.416 kb on - strand, within GFF4351 at 274.416 kb on - strand, within GFF4351 at 274.416 kb on - strand, within GFF4351 at 274.677 kb on - strand at 274.819 kb on - strand at 275.205 kb on + strand, within GFF4352 at 275.206 kb on - strand, within GFF4352 at 275.503 kb on - strand, within GFF4352
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 272,939 - GFF4350 0.22 +0.3 273,692 + GFF4351 0.16 -0.1 273,805 + GFF4351 0.26 +0.8 274,118 + GFF4351 0.53 -0.3 274,119 - GFF4351 0.53 -0.3 274,119 - GFF4351 0.53 +0.8 274,163 + GFF4351 0.56 +0.6 274,163 + GFF4351 0.56 +0.2 274,163 + GFF4351 0.56 -1.2 274,164 - GFF4351 0.56 -0.8 274,164 - GFF4351 0.56 +3.1 274,166 + GFF4351 0.57 -0.2 274,229 + GFF4351 0.62 +1.0 274,320 - GFF4351 0.70 -0.2 274,397 + GFF4351 0.76 -0.1 274,415 + GFF4351 0.78 -0.4 274,416 - GFF4351 0.78 -0.3 274,416 - GFF4351 0.78 +0.3 274,416 - GFF4351 0.78 +0.1 274,677 - -0.1 274,819 - -0.1 275,205 + GFF4352 0.32 +0.3 275,206 - GFF4352 0.32 -0.6 275,503 - GFF4352 0.52 -0.2
Or see this region's nucleotide sequence