Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4284 and GFF4285 are separated by 2 nucleotides GFF4285 and GFF4286 are separated by 74 nucleotides
GFF4284 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 203,720 to 205,303
GFF4284
GFF4285 - Tricarboxylate transport protein TctC, at 205,306 to 206,241
GFF4285
GFF4286 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 206,316 to 207,236
GFF4286
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1
2 at 204.603 kb on + strand, within GFF4284 at 204.604 kb on - strand, within GFF4284 at 204.660 kb on + strand, within GFF4284 at 204.661 kb on - strand, within GFF4284 at 204.681 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.810 kb on + strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 204.811 kb on - strand, within GFF4284 at 205.017 kb on + strand, within GFF4284 at 205.017 kb on + strand, within GFF4284 at 205.206 kb on + strand at 205.294 kb on + strand at 205.295 kb on - strand at 205.811 kb on + strand, within GFF4285 at 205.811 kb on + strand, within GFF4285 at 205.812 kb on - strand, within GFF4285 at 205.926 kb on - strand, within GFF4285 at 206.364 kb on + strand at 206.737 kb on + strand, within GFF4286 at 206.833 kb on + strand, within GFF4286
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 204,603 + GFF4284 0.56 -0.3 204,604 - GFF4284 0.56 +0.0 204,660 + GFF4284 0.59 +2.3 204,661 - GFF4284 0.59 +0.9 204,681 + GFF4284 0.61 +0.8 204,810 + GFF4284 0.69 -0.4 204,810 + GFF4284 0.69 -1.0 204,810 + GFF4284 0.69 -0.0 204,811 - GFF4284 0.69 -0.1 204,811 - GFF4284 0.69 +0.2 204,811 - GFF4284 0.69 -0.2 205,017 + GFF4284 0.82 -0.7 205,017 + GFF4284 0.82 +0.0 205,206 + +0.1 205,294 + -0.1 205,295 - -0.8 205,811 + GFF4285 0.54 +1.8 205,811 + GFF4285 0.54 -1.2 205,812 - GFF4285 0.54 +0.7 205,926 - GFF4285 0.66 +1.6 206,364 + +0.6 206,737 + GFF4286 0.46 +0.0 206,833 + GFF4286 0.56 -1.1
Or see this region's nucleotide sequence