Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4185 and GFF4186 are separated by 40 nucleotides GFF4186 and GFF4187 are separated by 32 nucleotides GFF4187 and GFF4188 are separated by 371 nucleotides GFF4188 and GFF4189 are separated by 92 nucleotides GFF4189 and GFF4190 are separated by 77 nucleotides
GFF4185 - RNA polymerase ECF-type sigma factor, at 102,488 to 103,123
GFF4185
GFF4186 - no description, at 103,164 to 103,364
GFF4186
GFF4187 - hypothetical protein, at 103,397 to 103,651
GFF4187
GFF4188 - Signal peptidase I (EC 3.4.21.89), at 104,023 to 104,688
GFF4188
GFF4189 - NUDIX hydrolase, at 104,781 to 105,173
GFF4189
GFF4190 - no description, at 105,251 to 105,973
GFF4190
Position (kb) 104
105 Strain fitness (log2 ratio) -1
0
1 at 103.031 kb on + strand, within GFF4185 at 103.031 kb on + strand, within GFF4185 at 103.425 kb on + strand, within GFF4187 at 103.459 kb on - strand, within GFF4187 at 103.618 kb on + strand, within GFF4187 at 103.618 kb on + strand, within GFF4187 at 103.710 kb on - strand at 103.784 kb on + strand at 103.785 kb on - strand at 103.785 kb on - strand at 103.785 kb on - strand at 103.958 kb on + strand at 103.958 kb on + strand at 103.958 kb on + strand at 104.179 kb on + strand, within GFF4188 at 104.180 kb on - strand, within GFF4188 at 104.180 kb on - strand, within GFF4188 at 104.573 kb on - strand, within GFF4188 at 104.573 kb on - strand, within GFF4188 at 104.573 kb on - strand, within GFF4188 at 104.621 kb on + strand, within GFF4188 at 104.622 kb on - strand at 104.721 kb on - strand at 104.721 kb on - strand at 104.721 kb on - strand at 104.792 kb on - strand at 104.973 kb on + strand, within GFF4189 at 104.973 kb on + strand, within GFF4189 at 104.973 kb on + strand, within GFF4189 at 104.974 kb on - strand, within GFF4189 at 104.974 kb on - strand, within GFF4189 at 104.974 kb on - strand, within GFF4189 at 105.018 kb on + strand, within GFF4189 at 105.473 kb on + strand, within GFF4190
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 103,031 + GFF4185 0.85 -0.4 103,031 + GFF4185 0.85 -0.9 103,425 + GFF4187 0.11 +0.4 103,459 - GFF4187 0.24 -1.2 103,618 + GFF4187 0.87 -0.3 103,618 + GFF4187 0.87 +0.5 103,710 - -0.6 103,784 + -1.4 103,785 - +0.1 103,785 - -0.2 103,785 - -0.3 103,958 + -0.3 103,958 + -0.7 103,958 + -0.5 104,179 + GFF4188 0.23 +0.2 104,180 - GFF4188 0.24 -1.1 104,180 - GFF4188 0.24 -0.1 104,573 - GFF4188 0.83 -0.6 104,573 - GFF4188 0.83 -1.0 104,573 - GFF4188 0.83 -0.9 104,621 + GFF4188 0.90 -0.7 104,622 - -0.7 104,721 - +0.2 104,721 - +0.8 104,721 - +0.0 104,792 - -0.7 104,973 + GFF4189 0.49 -0.2 104,973 + GFF4189 0.49 -1.1 104,973 + GFF4189 0.49 -0.6 104,974 - GFF4189 0.49 +0.8 104,974 - GFF4189 0.49 -0.2 104,974 - GFF4189 0.49 +0.3 105,018 + GFF4189 0.60 +0.6 105,473 + GFF4190 0.31 -1.1
Or see this region's nucleotide sequence