Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4130 and GFF4131 are separated by 19 nucleotides GFF4131 and GFF4132 are separated by 125 nucleotides
GFF4130 - Amidase family protein SACE_5032, at 34,938 to 36,458
GFF4130
GFF4131 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 36,478 to 38,142
GFF4131
GFF4132 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 38,268 to 39,500
GFF4132
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 35.480 kb on - strand, within GFF4130 at 35.864 kb on - strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.028 kb on + strand, within GFF4130 at 36.029 kb on - strand, within GFF4130 at 36.563 kb on + strand at 36.563 kb on + strand at 36.843 kb on - strand, within GFF4131 at 36.843 kb on - strand, within GFF4131 at 36.959 kb on + strand, within GFF4131 at 36.959 kb on + strand, within GFF4131 at 37.077 kb on - strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.127 kb on + strand, within GFF4131 at 37.128 kb on - strand, within GFF4131 at 37.256 kb on + strand, within GFF4131 at 37.719 kb on - strand, within GFF4131 at 37.787 kb on + strand, within GFF4131 at 37.788 kb on - strand, within GFF4131 at 37.857 kb on - strand, within GFF4131 at 37.955 kb on + strand, within GFF4131 at 37.955 kb on + strand, within GFF4131 at 38.137 kb on + strand at 38.559 kb on + strand, within GFF4132 at 38.745 kb on + strand, within GFF4132 at 38.746 kb on - strand, within GFF4132 at 38.746 kb on - strand, within GFF4132 at 39.054 kb on + strand, within GFF4132 at 39.055 kb on - strand, within GFF4132 at 39.055 kb on - strand, within GFF4132
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,480 - GFF4130 0.36 -0.5 35,864 - GFF4130 0.61 +0.2 36,028 + GFF4130 0.72 -0.4 36,028 + GFF4130 0.72 -0.7 36,028 + GFF4130 0.72 -0.9 36,028 + GFF4130 0.72 -0.4 36,028 + GFF4130 0.72 +0.6 36,029 - GFF4130 0.72 -0.7 36,563 + -1.2 36,563 + +2.8 36,843 - GFF4131 0.22 -1.1 36,843 - GFF4131 0.22 +0.8 36,959 + GFF4131 0.29 -0.8 36,959 + GFF4131 0.29 -1.6 37,077 - GFF4131 0.36 +0.4 37,127 + GFF4131 0.39 -0.9 37,127 + GFF4131 0.39 -0.3 37,127 + GFF4131 0.39 +0.9 37,128 - GFF4131 0.39 -0.9 37,256 + GFF4131 0.47 -1.2 37,719 - GFF4131 0.75 -0.6 37,787 + GFF4131 0.79 +0.0 37,788 - GFF4131 0.79 -0.2 37,857 - GFF4131 0.83 +0.3 37,955 + GFF4131 0.89 -2.4 37,955 + GFF4131 0.89 -1.1 38,137 + -1.3 38,559 + GFF4132 0.24 +1.2 38,745 + GFF4132 0.39 +0.0 38,746 - GFF4132 0.39 +0.3 38,746 - GFF4132 0.39 +0.2 39,054 + GFF4132 0.64 -0.8 39,055 - GFF4132 0.64 -0.9 39,055 - GFF4132 0.64 -1.1
Or see this region's nucleotide sequence