Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4047 and GFF4048 are separated by 9 nucleotides GFF4048 and GFF4049 are separated by 311 nucleotides GFF4049 and GFF4050 are separated by 48 nucleotides
GFF4047 - Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB, at 260,201 to 261,796
GFF4047
GFF4048 - Cobalt/zinc/cadmium efflux RND transporter, outer membrane protein CzcC, at 261,806 to 262,894
GFF4048
GFF4049 - no description, at 263,206 to 263,322
GFF4049
GFF4050 - no description, at 263,371 to 263,559
GFF4050
Position (kb) 261
262
263 Strain fitness (log2 ratio) -1
0
1
2 at 260.931 kb on + strand, within GFF4047 at 260.932 kb on - strand, within GFF4047 at 260.932 kb on - strand, within GFF4047 at 261.021 kb on - strand, within GFF4047 at 261.021 kb on - strand, within GFF4047 at 261.252 kb on + strand, within GFF4047 at 261.395 kb on + strand, within GFF4047 at 261.435 kb on + strand, within GFF4047 at 261.436 kb on - strand, within GFF4047 at 261.906 kb on + strand at 261.923 kb on + strand, within GFF4048 at 261.923 kb on + strand, within GFF4048 at 261.924 kb on - strand, within GFF4048 at 261.924 kb on - strand, within GFF4048 at 261.931 kb on + strand, within GFF4048 at 261.931 kb on + strand, within GFF4048 at 261.932 kb on - strand, within GFF4048 at 261.957 kb on + strand, within GFF4048 at 261.958 kb on - strand, within GFF4048 at 262.065 kb on + strand, within GFF4048 at 262.066 kb on - strand, within GFF4048 at 262.066 kb on - strand, within GFF4048 at 262.086 kb on - strand, within GFF4048 at 262.319 kb on + strand, within GFF4048 at 262.600 kb on + strand, within GFF4048 at 262.699 kb on - strand, within GFF4048 at 262.699 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.754 kb on - strand, within GFF4048 at 262.800 kb on - strand at 262.826 kb on + strand at 262.969 kb on + strand at 262.969 kb on + strand at 262.969 kb on + strand at 262.970 kb on - strand at 263.075 kb on - strand at 263.282 kb on - strand, within GFF4049 at 263.341 kb on + strand at 263.342 kb on - strand at 263.498 kb on + strand, within GFF4050 at 263.557 kb on + strand at 263.582 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.586 kb on + strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.587 kb on - strand at 263.664 kb on - strand at 263.664 kb on - strand at 263.743 kb on + strand at 263.818 kb on + strand at 263.819 kb on - strand at 263.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 260,931 + GFF4047 0.46 +0.1 260,932 - GFF4047 0.46 +0.2 260,932 - GFF4047 0.46 -0.0 261,021 - GFF4047 0.51 -0.5 261,021 - GFF4047 0.51 +0.6 261,252 + GFF4047 0.66 -0.6 261,395 + GFF4047 0.75 +0.8 261,435 + GFF4047 0.77 +0.4 261,436 - GFF4047 0.77 +0.1 261,906 + -0.0 261,923 + GFF4048 0.11 +1.0 261,923 + GFF4048 0.11 -0.7 261,924 - GFF4048 0.11 +0.1 261,924 - GFF4048 0.11 +0.5 261,931 + GFF4048 0.11 -0.5 261,931 + GFF4048 0.11 +2.0 261,932 - GFF4048 0.12 -0.3 261,957 + GFF4048 0.14 +1.0 261,958 - GFF4048 0.14 +0.4 262,065 + GFF4048 0.24 +0.2 262,066 - GFF4048 0.24 -0.4 262,066 - GFF4048 0.24 +0.9 262,086 - GFF4048 0.26 +0.2 262,319 + GFF4048 0.47 +0.4 262,600 + GFF4048 0.73 +1.7 262,699 - GFF4048 0.82 +0.3 262,699 - GFF4048 0.82 +0.4 262,754 - GFF4048 0.87 -0.5 262,754 - GFF4048 0.87 -0.4 262,754 - GFF4048 0.87 -0.7 262,800 - +0.1 262,826 + -0.3 262,969 + +0.1 262,969 + -0.2 262,969 + +1.4 262,970 - -0.2 263,075 - -0.5 263,282 - GFF4049 0.65 +0.6 263,341 + +0.3 263,342 - -0.3 263,498 + GFF4050 0.67 -0.6 263,557 + -0.0 263,582 + +0.2 263,586 + +0.3 263,586 + +0.3 263,586 + -0.3 263,586 + -0.9 263,586 + +1.0 263,587 - +0.5 263,587 - +0.6 263,587 - +1.0 263,587 - +0.1 263,587 - -0.0 263,664 - +0.7 263,664 - +0.1 263,743 + -1.2 263,818 + +0.4 263,819 - +0.4 263,832 + -0.2
Or see this region's nucleotide sequence