Strain Fitness in Variovorax sp. SCN45 around GFF397

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF395 and GFF396 overlap by 11 nucleotidesGFF396 and GFF397 are separated by 41 nucleotidesGFF397 and GFF398 are separated by 13 nucleotidesGFF398 and GFF399 are separated by 59 nucleotides GFF395 - D-amino acid dehydrogenase (EC 1.4.99.6), at 427,206 to 428,459 GFF395 GFF396 - hypothetical protein, at 428,449 to 428,877 GFF396 GFF397 - NAD(P)H-hydrate epimerase (EC 5.1.99.6) / ADP-dependent (S)-NAD(P)H-hydrate dehydratase (EC 4.2.1.136), at 428,919 to 430,379 GFF397 GFF398 - Putative oxidoreductase, at 430,393 to 431,157 GFF398 GFF399 - 3'-to-5' exoribonuclease RNase R, at 431,217 to 433,538 GFF399 Position (kb) 428 429 430 431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 427.935 kb on + strand, within GFF395at 427.935 kb on + strand, within GFF395at 427.935 kb on + strand, within GFF395at 427.935 kb on + strand, within GFF395at 428.019 kb on + strand, within GFF395at 428.020 kb on - strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.091 kb on + strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.092 kb on - strand, within GFF395at 428.196 kb on + strand, within GFF395at 428.196 kb on + strand, within GFF395at 428.196 kb on + strand, within GFF395at 428.196 kb on + strand, within GFF395at 428.196 kb on + strand, within GFF395at 428.196 kb on + strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.197 kb on - strand, within GFF395at 428.314 kb on + strand, within GFF395at 428.457 kb on + strandat 428.457 kb on + strandat 428.457 kb on + strandat 428.457 kb on + strandat 428.457 kb on + strandat 428.457 kb on + strandat 428.458 kb on - strandat 428.825 kb on - strand, within GFF396at 428.888 kb on + strandat 428.888 kb on + strandat 428.888 kb on + strandat 428.888 kb on + strandat 428.888 kb on + strandat 428.889 kb on - strandat 428.889 kb on - strandat 428.889 kb on - strandat 428.889 kb on - strandat 428.889 kb on - strandat 428.889 kb on - strandat 428.889 kb on - strandat 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.533 kb on + strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.534 kb on - strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.642 kb on + strand, within GFF397at 429.643 kb on - strand, within GFF397at 430.270 kb on + strandat 430.270 kb on + strandat 430.270 kb on + strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.271 kb on - strandat 430.395 kb on - strandat 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.475 kb on + strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.476 kb on - strand, within GFF398at 430.546 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.619 kb on + strand, within GFF398at 430.620 kb on - strand, within GFF398at 430.620 kb on - strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.682 kb on + strand, within GFF398at 430.683 kb on - strand, within GFF398at 430.683 kb on - strand, within GFF398at 430.683 kb on - strand, within GFF398at 430.683 kb on - strand, within GFF398at 431.200 kb on + strandat 431.201 kb on - strandat 431.201 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
427,935 + GFF395 0.58 -0.7
427,935 + GFF395 0.58 +0.9
427,935 + GFF395 0.58 -0.8
427,935 + GFF395 0.58 -0.3
428,019 + GFF395 0.65 -0.4
428,020 - GFF395 0.65 -0.2
428,091 + GFF395 0.71 -0.6
428,091 + GFF395 0.71 -0.7
428,091 + GFF395 0.71 +1.9
428,091 + GFF395 0.71 -1.6
428,091 + GFF395 0.71 +1.2
428,091 + GFF395 0.71 -1.1
428,091 + GFF395 0.71 -0.5
428,091 + GFF395 0.71 -0.2
428,091 + GFF395 0.71 +2.2
428,092 - GFF395 0.71 -0.3
428,092 - GFF395 0.71 -0.7
428,092 - GFF395 0.71 -0.3
428,092 - GFF395 0.71 -0.3
428,092 - GFF395 0.71 -1.4
428,092 - GFF395 0.71 +2.0
428,092 - GFF395 0.71 +0.6
428,092 - GFF395 0.71 +0.3
428,092 - GFF395 0.71 -1.6
428,092 - GFF395 0.71 -0.4
428,092 - GFF395 0.71 +0.7
428,092 - GFF395 0.71 +0.1
428,196 + GFF395 0.79 -0.2
428,196 + GFF395 0.79 -1.3
428,196 + GFF395 0.79 -0.9
428,196 + GFF395 0.79 -0.6
428,196 + GFF395 0.79 +0.4
428,196 + GFF395 0.79 -0.6
428,197 - GFF395 0.79 -0.6
428,197 - GFF395 0.79 -0.4
428,197 - GFF395 0.79 -0.3
428,197 - GFF395 0.79 +0.3
428,197 - GFF395 0.79 -1.2
428,197 - GFF395 0.79 -0.1
428,197 - GFF395 0.79 -0.8
428,197 - GFF395 0.79 +0.5
428,197 - GFF395 0.79 -0.1
428,197 - GFF395 0.79 +0.2
428,197 - GFF395 0.79 -0.3
428,314 + GFF395 0.88 +0.6
428,457 + -0.2
428,457 + -1.0
428,457 + -0.8
428,457 + +0.2
428,457 + +0.8
428,457 + -0.9
428,458 - -1.7
428,825 - GFF396 0.88 +0.5
428,888 + -0.0
428,888 + -1.3
428,888 + +0.3
428,888 + -2.2
428,888 + -0.2
428,889 - -1.6
428,889 - -0.2
428,889 - -0.9
428,889 - -0.3
428,889 - -0.2
428,889 - -1.1
428,889 - -0.4
429,533 + GFF397 0.42 -1.4
429,533 + GFF397 0.42 -0.8
429,533 + GFF397 0.42 +0.2
429,533 + GFF397 0.42 -1.3
429,533 + GFF397 0.42 -1.5
429,533 + GFF397 0.42 +1.4
429,533 + GFF397 0.42 +0.7
429,533 + GFF397 0.42 -1.5
429,533 + GFF397 0.42 -1.3
429,533 + GFF397 0.42 +0.6
429,533 + GFF397 0.42 +0.3
429,533 + GFF397 0.42 -0.7
429,533 + GFF397 0.42 -0.2
429,533 + GFF397 0.42 -0.8
429,533 + GFF397 0.42 -0.6
429,533 + GFF397 0.42 -0.4
429,533 + GFF397 0.42 +0.2
429,533 + GFF397 0.42 +0.2
429,533 + GFF397 0.42 -0.3
429,533 + GFF397 0.42 +1.2
429,533 + GFF397 0.42 -0.4
429,533 + GFF397 0.42 -1.0
429,533 + GFF397 0.42 -0.4
429,533 + GFF397 0.42 +1.2
429,533 + GFF397 0.42 -0.2
429,533 + GFF397 0.42 +0.2
429,533 + GFF397 0.42 +0.2
429,533 + GFF397 0.42 -3.1
429,533 + GFF397 0.42 -0.5
429,533 + GFF397 0.42 +0.0
429,533 + GFF397 0.42 -0.4
429,533 + GFF397 0.42 +1.2
429,533 + GFF397 0.42 +0.4
429,533 + GFF397 0.42 -0.2
429,533 + GFF397 0.42 -0.9
429,534 - GFF397 0.42 +0.0
429,534 - GFF397 0.42 +0.4
429,534 - GFF397 0.42 -1.0
429,534 - GFF397 0.42 -0.7
429,534 - GFF397 0.42 -0.8
429,534 - GFF397 0.42 +1.1
429,534 - GFF397 0.42 +0.2
429,534 - GFF397 0.42 -0.4
429,534 - GFF397 0.42 +2.2
429,534 - GFF397 0.42 +0.2
429,534 - GFF397 0.42 +0.1
429,534 - GFF397 0.42 +0.7
429,534 - GFF397 0.42 +0.2
429,642 + GFF397 0.49 -0.7
429,642 + GFF397 0.49 -0.7
429,642 + GFF397 0.49 +0.2
429,642 + GFF397 0.49 +0.7
429,642 + GFF397 0.49 -1.5
429,642 + GFF397 0.49 -0.8
429,643 - GFF397 0.50 +4.2
430,270 + -0.0
430,270 + +0.2
430,270 + +0.3
430,271 - -1.7
430,271 - -0.5
430,271 - -1.2
430,271 - +2.2
430,271 - +1.2
430,271 - -0.2
430,395 - -0.6
430,475 + GFF398 0.11 +0.0
430,475 + GFF398 0.11 +0.6
430,475 + GFF398 0.11 -0.2
430,475 + GFF398 0.11 -0.0
430,475 + GFF398 0.11 +0.4
430,475 + GFF398 0.11 +0.6
430,475 + GFF398 0.11 +0.2
430,475 + GFF398 0.11 -1.1
430,475 + GFF398 0.11 -0.2
430,475 + GFF398 0.11 +0.4
430,475 + GFF398 0.11 -0.6
430,475 + GFF398 0.11 +0.4
430,475 + GFF398 0.11 -0.9
430,475 + GFF398 0.11 +0.1
430,475 + GFF398 0.11 -0.2
430,476 - GFF398 0.11 -0.5
430,476 - GFF398 0.11 -1.4
430,476 - GFF398 0.11 -0.0
430,476 - GFF398 0.11 -1.0
430,476 - GFF398 0.11 +0.2
430,476 - GFF398 0.11 -0.0
430,476 - GFF398 0.11 +0.9
430,476 - GFF398 0.11 -0.8
430,476 - GFF398 0.11 -0.4
430,476 - GFF398 0.11 +0.1
430,476 - GFF398 0.11 -0.3
430,476 - GFF398 0.11 +0.6
430,476 - GFF398 0.11 +1.6
430,476 - GFF398 0.11 +0.7
430,546 + GFF398 0.20 -0.7
430,619 + GFF398 0.30 +0.3
430,619 + GFF398 0.30 +0.2
430,619 + GFF398 0.30 +0.5
430,619 + GFF398 0.30 +1.7
430,619 + GFF398 0.30 -0.2
430,620 - GFF398 0.30 -1.3
430,620 - GFF398 0.30 -0.5
430,682 + GFF398 0.38 -2.2
430,682 + GFF398 0.38 +0.8
430,682 + GFF398 0.38 +1.4
430,682 + GFF398 0.38 -0.2
430,683 - GFF398 0.38 -0.7
430,683 - GFF398 0.38 -2.5
430,683 - GFF398 0.38 +0.7
430,683 - GFF398 0.38 -1.2
431,200 + -1.4
431,201 - -0.8
431,201 - -0.6

Or see this region's nucleotide sequence