Strain Fitness in Variovorax sp. SCN45

Strain Fitness in Variovorax sp. SCN45 around GFF3886

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	phage_bap4
				remove
81,950	+			-1.0
81,950	+			+1.5
81,950	+			+0.4
81,950	+			+2.0
81,950	+			-0.5
81,950	+			-0.1
81,950	+			+0.2
81,950	+			-0.2
81,950	+			+0.4
81,950	+			-0.8
81,951	-			-1.5
81,951	-			-0.7
81,951	-			-0.2
81,951	-			+1.0
81,951	-			-0.2
81,951	-			+0.0
81,951	-			+1.2
81,951	-			-0.2
81,951	-			-0.0
81,951	-			+0.4
81,951	-			+0.1
81,951	-			-0.2
81,951	-			-1.0
81,951	-			-1.0
81,951	-			-0.4
81,951	-			-1.1
81,951	-			+0.1
82,007	+			-0.8
82,008	-			+1.5
82,025	+	GFF3885	0.11	+0.4
82,025	+	GFF3885	0.11	-0.9
82,415	+	GFF3885	0.59	-0.6
82,415	+	GFF3885	0.59	-0.3
82,415	+	GFF3885	0.59	-0.2
82,415	+	GFF3885	0.59	-1.5
82,415	+	GFF3885	0.59	-0.8
82,415	+	GFF3885	0.59	-1.8
82,416	-	GFF3885	0.59	-0.8
82,416	-	GFF3885	0.59	-1.5
82,416	-	GFF3885	0.59	-1.0
82,416	-	GFF3885	0.59	-2.4
82,416	-	GFF3885	0.59	-1.2
82,416	-	GFF3885	0.59	-0.4
82,416	-	GFF3885	0.59	+0.4
82,416	-	GFF3885	0.59	-0.8
82,416	-	GFF3885	0.59	-1.1
82,416	-	GFF3885	0.59	+0.5
82,416	-	GFF3885	0.59	+2.0
82,421	+	GFF3885	0.60	-0.5
82,421	+	GFF3885	0.60	-1.6
82,421	+	GFF3885	0.60	-0.0
82,422	-	GFF3885	0.60	-0.6
82,422	-	GFF3885	0.60	-0.1
82,706	+			+0.7
82,706	+			-0.8
82,707	-			-0.6
82,707	-			+0.6
82,707	-			-0.3
82,707	-			-1.4
82,707	-			-0.3
82,721	+			-1.0
82,722	-			+0.6
82,722	-			+0.1
82,732	+			-0.6
82,733	-			+0.4
82,733	-			-0.5
82,733	-			-0.8
82,733	-			-0.3
83,237	+	GFF3886	0.16	+1.3
83,238	-	GFF3886	0.16	+0.9
83,238	-	GFF3886	0.16	+0.9
83,238	-	GFF3886	0.16	+0.2
83,498	+	GFF3886	0.25	+2.0
83,499	-	GFF3886	0.26	+2.5
83,499	-	GFF3886	0.26	+2.3
83,499	-	GFF3886	0.26	+2.3
83,499	-	GFF3886	0.26	+1.7
83,603	+	GFF3886	0.29	+2.1
83,604	-	GFF3886	0.29	+1.8
83,604	-	GFF3886	0.29	+2.2
83,604	-	GFF3886	0.29	+2.0
83,604	-	GFF3886	0.29	+2.0
83,604	-	GFF3886	0.29	+2.2
83,632	+	GFF3886	0.30	+3.9
83,723	+	GFF3886	0.33	+3.7
83,724	-	GFF3886	0.33	+3.5
83,724	-	GFF3886	0.33	+5.0
83,732	+	GFF3886	0.34	+3.2
83,732	+	GFF3886	0.34	+3.5
83,733	-	GFF3886	0.34	+4.1
83,733	-	GFF3886	0.34	+2.6
83,733	-	GFF3886	0.34	+3.5
83,733	-	GFF3886	0.34	+3.4
83,733	-	GFF3886	0.34	+3.4
83,733	-	GFF3886	0.34	+3.8
83,789	+	GFF3886	0.36	+3.1
83,789	+	GFF3886	0.36	+3.4
83,790	-	GFF3886	0.36	+4.8
83,790	-	GFF3886	0.36	+3.3
83,790	-	GFF3886	0.36	+3.1
83,936	+	GFF3886	0.41	+2.3
83,936	+	GFF3886	0.41	+3.8
83,936	+	GFF3886	0.41	+3.4
83,937	-	GFF3886	0.41	+3.5
83,937	-	GFF3886	0.41	+3.4
84,414	+	GFF3886	0.58	+3.6
84,414	+	GFF3886	0.58	+3.0
84,415	-	GFF3886	0.58	+3.4
84,415	-	GFF3886	0.58	+4.0
84,415	-	GFF3886	0.58	+3.4
84,415	-	GFF3886	0.58	+4.3
84,618	+	GFF3886	0.65	+2.3
84,618	+	GFF3886	0.65	+3.1
84,618	+	GFF3886	0.65	+3.9
84,618	+	GFF3886	0.65	+2.7
84,618	+	GFF3886	0.65	+3.1
84,618	+	GFF3886	0.65	+2.9
84,618	+	GFF3886	0.65	+3.9
84,619	-	GFF3886	0.65	+3.8
84,619	-	GFF3886	0.65	+4.0
84,619	-	GFF3886	0.65	+3.2
84,619	-	GFF3886	0.65	+3.1
84,675	-	GFF3886	0.67	+3.4
85,169	+	GFF3886	0.85	+3.4
85,169	+	GFF3886	0.85	+2.3
85,169	+	GFF3886	0.85	+3.1
85,169	+	GFF3886	0.85	+3.3
85,169	+	GFF3886	0.85	+2.9
85,169	+	GFF3886	0.85	+2.2
85,170	-	GFF3886	0.85	+4.4
85,170	-	GFF3886	0.85	+3.7
85,170	-	GFF3886	0.85	+3.8
85,170	-	GFF3886	0.85	+3.3
85,170	-	GFF3886	0.85	+3.4
85,170	-	GFF3886	0.85	+3.4
85,170	-	GFF3886	0.85	+3.0
85,170	-	GFF3886	0.85	+3.8
85,170	-	GFF3886	0.85	+4.7
85,265	+	GFF3886	0.88	+3.2
85,265	+	GFF3886	0.88	+2.9
85,265	+	GFF3886	0.88	+4.1
85,265	+	GFF3886	0.88	+3.7
85,265	+	GFF3886	0.88	+3.5
85,265	+	GFF3886	0.88	+2.8
85,266	-	GFF3886	0.88	+3.8
85,266	-	GFF3886	0.88	+3.0
85,266	-	GFF3886	0.88	+3.0
85,266	-	GFF3886	0.88	+3.7
85,266	-	GFF3886	0.88	+3.4
85,266	-	GFF3886	0.88	+3.7
85,300	+	GFF3886	0.89	+4.2
85,301	-	GFF3886	0.89	+3.4
85,301	-	GFF3886	0.89	+3.6
85,301	-	GFF3886	0.89	+3.8
85,301	-	GFF3886	0.89	+3.9
85,301	-	GFF3886	0.89	+5.2
85,322	+	GFF3886	0.90	+3.4
85,322	+	GFF3886	0.90	+3.5
85,322	+	GFF3886	0.90	+3.6
85,322	+	GFF3886	0.90	+3.3
85,322	+	GFF3886	0.90	+4.3
85,322	+	GFF3886	0.90	+3.0
85,322	+	GFF3886	0.90	+3.9
85,323	-			+3.6
85,323	-			+3.0
85,323	-			+3.5
85,323	-			+3.4
85,323	-			+4.2
85,323	-			+3.6
85,323	-			+3.8
85,323	-			+3.8
85,611	+			+1.8
85,611	+			+1.6
85,611	+			+2.1
85,611	+			+2.4
85,612	-			+1.5
85,612	-			-0.2
85,612	-			+0.4
85,637	+			+3.5
85,638	-			-0.4
85,648	+			+2.4
85,689	+			+0.9
85,689	+			-0.0
85,689	+			-0.0
85,689	+			-0.2
85,689	+			-0.1
85,690	-			-2.6
85,704	+			+0.6
85,704	+			+0.3
85,705	-			+0.6
85,705	-			-1.6
85,705	-			-0.6
85,705	-			-1.5
85,705	-			+1.0
85,706	+			-1.3
85,708	+			-0.1
85,708	+			+1.0
85,708	+			+0.4
85,708	+			-0.8
85,708	+			+0.4
85,708	+			+1.0
85,708	+			+0.1
85,708	+			+4.0
85,708	+			-0.9
85,708	+			-0.7
85,708	+			+0.3
85,708	+			+0.7
85,708	+			-0.2
85,708	+			-0.4
85,708	+			-0.0
85,708	+			+0.6
85,708	+			+0.8
85,708	+			-0.1
85,708	+			+0.2
85,708	+			-0.6
85,708	+			+1.3
85,708	+			+0.2
85,708	+			+1.2
85,709	-			+0.7
85,709	-			-0.3
85,709	-			+0.3
85,709	-			+0.7
85,709	-			-1.3
85,709	-			+0.7
85,709	-			-0.1
85,709	-			-1.3
85,709	-			+0.5
85,709	-			-0.6
85,709	-			+0.7
85,709	-			-0.9
85,709	-			-0.6
85,710	-			-1.3
85,721	+			-0.0
85,721	+			-0.7
85,721	+			+3.3
85,721	+			+1.5
85,721	+			+0.2
85,721	+			-0.8
85,721	+			-1.3
85,721	+			-1.0
85,721	+			-0.7
85,722	-			+1.0
85,722	-			+1.0
85,722	-			-1.2
85,722	-			+0.1
85,722	-			-0.5
85,722	-			-0.3
85,722	-			+0.3
85,722	-			+3.5
85,722	-			-1.5
85,722	-			-0.5
85,722	-			+0.0
85,722	-			-0.2

Or see this region's nucleotide sequence