Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3858 and GFF3859 are separated by 26 nucleotides GFF3859 and GFF3860 are separated by 99 nucleotides GFF3860 and GFF3861 are separated by 99 nucleotides
GFF3858 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 56,790 to 57,743
GFF3858
GFF3859 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), FadG, at 57,770 to 58,513
GFF3859
GFF3860 - Acyl carrier protein, at 58,613 to 58,852
GFF3860
GFF3861 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 58,952 to 60,196
GFF3861
Position (kb)
58
59 Strain fitness (log2 ratio)
-2
-1
0
1 at 57.759 kb on + strand at 57.759 kb on + strand at 57.759 kb on + strand at 57.759 kb on + strand at 57.759 kb on + strand at 57.759 kb on + strand at 57.759 kb on + strand at 57.769 kb on + strand at 57.769 kb on + strand at 57.769 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.511 kb on + strand at 58.893 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 57,759 + -2.0 57,759 + -0.2 57,759 + -0.3 57,759 + -0.0 57,759 + +0.3 57,759 + +1.2 57,759 + +0.2 57,769 + +0.3 57,769 + -0.8 57,769 + -0.3 58,511 + -1.1 58,511 + -1.2 58,511 + -0.3 58,511 + +0.1 58,511 + -1.2 58,511 + -0.9 58,511 + -0.5 58,511 + -1.5 58,511 + +1.0 58,511 + -1.5 58,511 + -1.1 58,511 + +0.2 58,893 + -0.4
Or see this region's nucleotide sequence