Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3827 and GFF3828 are separated by 139 nucleotides GFF3828 and GFF3829 are separated by 100 nucleotides GFF3829 and GFF3830 overlap by 7 nucleotides
GFF3827 - UPF0118 membrane protein SMc00793, at 16,538 to 17,818
GFF3827
GFF3828 - hypothetical protein, at 17,958 to 20,318
GFF3828
GFF3829 - hypothetical protein, at 20,419 to 20,814
GFF3829
GFF3830 - Uncharacterized MFS-type transporter, at 20,808 to 22,064
GFF3830
Position (kb) 17
18
19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.186 kb on + strand, within GFF3827 at 17.187 kb on - strand, within GFF3827 at 17.255 kb on + strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.256 kb on - strand, within GFF3827 at 17.331 kb on - strand, within GFF3827 at 17.378 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.504 kb on + strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.505 kb on - strand, within GFF3827 at 17.816 kb on + strand at 17.843 kb on - strand at 17.881 kb on + strand at 17.998 kb on - strand at 18.493 kb on - strand, within GFF3828 at 18.975 kb on + strand, within GFF3828 at 18.975 kb on + strand, within GFF3828 at 19.371 kb on + strand, within GFF3828 at 19.371 kb on + strand, within GFF3828 at 19.372 kb on - strand, within GFF3828 at 19.523 kb on - strand, within GFF3828 at 19.523 kb on - strand, within GFF3828 at 19.559 kb on - strand, within GFF3828 at 19.723 kb on - strand, within GFF3828 at 19.734 kb on + strand, within GFF3828 at 19.735 kb on - strand, within GFF3828 at 19.735 kb on - strand, within GFF3828 at 20.012 kb on - strand, within GFF3828 at 20.012 kb on - strand, within GFF3828 at 20.079 kb on + strand, within GFF3828 at 20.079 kb on + strand, within GFF3828 at 20.079 kb on + strand, within GFF3828 at 20.080 kb on - strand, within GFF3828 at 20.135 kb on + strand at 20.135 kb on + strand at 20.136 kb on - strand at 20.136 kb on - strand at 20.136 kb on - strand at 20.136 kb on - strand at 20.397 kb on + strand at 20.397 kb on + strand at 20.397 kb on + strand at 20.397 kb on + strand at 20.398 kb on - strand at 20.426 kb on - strand at 20.500 kb on + strand, within GFF3829 at 20.500 kb on + strand, within GFF3829 at 20.500 kb on + strand, within GFF3829 at 20.501 kb on - strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.755 kb on + strand, within GFF3829 at 20.756 kb on - strand, within GFF3829 at 20.756 kb on - strand, within GFF3829 at 20.756 kb on - strand, within GFF3829 at 20.776 kb on + strand at 20.777 kb on - strand at 20.777 kb on - strand at 21.070 kb on + strand, within GFF3830 at 21.103 kb on + strand, within GFF3830 at 21.103 kb on + strand, within GFF3830 at 21.103 kb on + strand, within GFF3830 at 21.104 kb on - strand, within GFF3830
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 17,186 + GFF3827 0.51 +0.0 17,187 - GFF3827 0.51 +1.2 17,255 + GFF3827 0.56 -0.7 17,256 - GFF3827 0.56 -0.6 17,256 - GFF3827 0.56 -0.6 17,256 - GFF3827 0.56 -0.2 17,331 - GFF3827 0.62 -1.9 17,378 + GFF3827 0.66 -2.1 17,504 + GFF3827 0.75 -0.6 17,504 + GFF3827 0.75 -0.5 17,504 + GFF3827 0.75 -1.0 17,504 + GFF3827 0.75 +0.0 17,504 + GFF3827 0.75 -0.4 17,504 + GFF3827 0.75 -0.4 17,505 - GFF3827 0.75 +0.4 17,505 - GFF3827 0.75 +0.4 17,505 - GFF3827 0.75 +0.2 17,505 - GFF3827 0.75 -0.6 17,505 - GFF3827 0.75 -0.5 17,816 + -1.0 17,843 - -0.6 17,881 + -0.2 17,998 - -0.2 18,493 - GFF3828 0.23 -3.0 18,975 + GFF3828 0.43 -0.1 18,975 + GFF3828 0.43 -0.0 19,371 + GFF3828 0.60 +0.0 19,371 + GFF3828 0.60 +1.5 19,372 - GFF3828 0.60 -0.3 19,523 - GFF3828 0.66 +1.5 19,523 - GFF3828 0.66 -0.0 19,559 - GFF3828 0.68 -0.5 19,723 - GFF3828 0.75 -0.5 19,734 + GFF3828 0.75 -0.5 19,735 - GFF3828 0.75 +2.6 19,735 - GFF3828 0.75 -0.3 20,012 - GFF3828 0.87 +1.0 20,012 - GFF3828 0.87 +0.1 20,079 + GFF3828 0.90 +0.5 20,079 + GFF3828 0.90 -0.4 20,079 + GFF3828 0.90 +0.0 20,080 - GFF3828 0.90 +0.4 20,135 + -0.0 20,135 + -0.6 20,136 - +0.6 20,136 - -0.1 20,136 - +0.8 20,136 - +0.4 20,397 + +0.1 20,397 + +2.0 20,397 + -1.0 20,397 + -0.3 20,398 - -0.1 20,426 - -0.0 20,500 + GFF3829 0.20 +0.1 20,500 + GFF3829 0.20 -0.7 20,500 + GFF3829 0.20 -0.4 20,501 - GFF3829 0.21 -1.2 20,755 + GFF3829 0.85 -1.0 20,755 + GFF3829 0.85 -1.7 20,755 + GFF3829 0.85 +0.6 20,755 + GFF3829 0.85 +0.6 20,755 + GFF3829 0.85 -0.6 20,755 + GFF3829 0.85 +0.4 20,756 - GFF3829 0.85 +0.4 20,756 - GFF3829 0.85 -1.0 20,756 - GFF3829 0.85 +0.1 20,776 + -1.0 20,777 - -2.2 20,777 - +0.0 21,070 + GFF3830 0.21 +0.4 21,103 + GFF3830 0.23 -0.1 21,103 + GFF3830 0.23 +0.5 21,103 + GFF3830 0.23 +0.1 21,104 - GFF3830 0.24 -0.2
Or see this region's nucleotide sequence