Strain Fitness in Variovorax sp. SCN45 around GFF3751

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3749 and GFF3750 overlap by 4 nucleotidesGFF3750 and GFF3751 are separated by 46 nucleotidesGFF3751 and GFF3752 are separated by 65 nucleotidesGFF3752 and GFF3753 overlap by 4 nucleotides GFF3749 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 244,191 to 244,997 GFF3749 GFF3750 - no description, at 244,994 to 245,395 GFF3750 GFF3751 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 245,442 to 246,209 GFF3751 GFF3752 - KEGG: catechol 2,3-dioxygenase , at 246,275 to 246,826 GFF3752 GFF3753 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 246,823 to 247,842 GFF3753 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1 2at 244.558 kb on + strand, within GFF3749at 245.070 kb on + strand, within GFF3750at 245.071 kb on - strand, within GFF3750at 245.071 kb on - strand, within GFF3750at 245.071 kb on - strand, within GFF3750at 245.073 kb on + strand, within GFF3750at 245.073 kb on + strand, within GFF3750at 245.073 kb on + strand, within GFF3750at 245.074 kb on - strand, within GFF3750at 245.232 kb on + strand, within GFF3750at 245.232 kb on + strand, within GFF3750at 245.233 kb on - strand, within GFF3750at 245.233 kb on - strand, within GFF3750at 245.233 kb on - strand, within GFF3750at 245.233 kb on - strand, within GFF3750at 245.233 kb on - strand, within GFF3750at 245.233 kb on - strand, within GFF3750at 245.271 kb on + strand, within GFF3750at 245.271 kb on + strand, within GFF3750at 245.271 kb on + strand, within GFF3750at 245.271 kb on + strand, within GFF3750at 245.271 kb on + strand, within GFF3750at 245.272 kb on - strand, within GFF3750at 245.272 kb on - strand, within GFF3750at 245.272 kb on - strand, within GFF3750at 245.272 kb on - strand, within GFF3750at 245.272 kb on - strand, within GFF3750at 245.272 kb on - strand, within GFF3750at 245.334 kb on + strand, within GFF3750at 245.334 kb on + strand, within GFF3750at 245.334 kb on + strand, within GFF3750at 245.335 kb on - strand, within GFF3750at 245.335 kb on - strand, within GFF3750at 245.335 kb on - strand, within GFF3750at 245.384 kb on + strandat 245.384 kb on + strandat 245.385 kb on - strandat 245.385 kb on - strandat 245.385 kb on - strandat 245.385 kb on - strandat 245.419 kb on + strandat 245.419 kb on + strandat 245.420 kb on - strandat 245.491 kb on + strandat 245.491 kb on + strandat 245.491 kb on + strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.492 kb on - strandat 245.539 kb on + strand, within GFF3751at 245.539 kb on + strand, within GFF3751at 245.540 kb on - strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.689 kb on + strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.690 kb on - strand, within GFF3751at 245.914 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.091 kb on + strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.092 kb on - strand, within GFF3751at 246.132 kb on + strand, within GFF3751at 246.133 kb on - strandat 246.133 kb on - strandat 246.372 kb on + strand, within GFF3752at 246.372 kb on + strand, within GFF3752at 246.372 kb on + strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.409 kb on - strand, within GFF3752at 246.420 kb on + strand, within GFF3752at 246.420 kb on + strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.421 kb on - strand, within GFF3752at 246.516 kb on + strand, within GFF3752at 246.558 kb on + strand, within GFF3752at 246.558 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.594 kb on + strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.595 kb on - strand, within GFF3752at 246.726 kb on + strand, within GFF3752at 246.726 kb on + strand, within GFF3752at 246.727 kb on - strand, within GFF3752at 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.848 kb on + strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.849 kb on - strandat 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.935 kb on + strand, within GFF3753at 246.936 kb on - strand, within GFF3753at 247.076 kb on + strand, within GFF3753at 247.077 kb on - strand, within GFF3753at 247.083 kb on - strand, within GFF3753at 247.169 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753at 247.193 kb on + strand, within GFF3753

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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244,558 + GFF3749 0.45 -0.1
245,070 + GFF3750 0.19 +0.2
245,071 - GFF3750 0.19 -0.8
245,071 - GFF3750 0.19 -0.1
245,071 - GFF3750 0.19 -1.8
245,073 + GFF3750 0.20 +2.1
245,073 + GFF3750 0.20 +0.8
245,073 + GFF3750 0.20 +1.1
245,074 - GFF3750 0.20 +0.4
245,232 + GFF3750 0.59 +0.8
245,232 + GFF3750 0.59 -1.4
245,233 - GFF3750 0.59 -0.2
245,233 - GFF3750 0.59 -0.4
245,233 - GFF3750 0.59 -0.2
245,233 - GFF3750 0.59 +1.2
245,233 - GFF3750 0.59 -0.7
245,233 - GFF3750 0.59 +0.1
245,271 + GFF3750 0.69 -0.3
245,271 + GFF3750 0.69 -0.3
245,271 + GFF3750 0.69 +0.9
245,271 + GFF3750 0.69 +1.1
245,271 + GFF3750 0.69 -0.6
245,272 - GFF3750 0.69 -0.1
245,272 - GFF3750 0.69 -0.4
245,272 - GFF3750 0.69 -0.9
245,272 - GFF3750 0.69 -0.5
245,272 - GFF3750 0.69 -1.1
245,272 - GFF3750 0.69 -0.2
245,334 + GFF3750 0.85 +0.2
245,334 + GFF3750 0.85 +0.0
245,334 + GFF3750 0.85 +0.5
245,335 - GFF3750 0.85 -0.7
245,335 - GFF3750 0.85 -0.1
245,335 - GFF3750 0.85 -0.4
245,384 + -1.7
245,384 + -0.6
245,385 - -1.0
245,385 - -0.4
245,385 - -0.6
245,385 - -0.7
245,419 + -0.6
245,419 + -0.2
245,420 - -0.8
245,491 + +0.1
245,491 + -1.1
245,491 + +0.3
245,492 - +0.9
245,492 - -0.6
245,492 - +0.5
245,492 - +0.5
245,492 - +0.4
245,539 + GFF3751 0.13 +0.4
245,539 + GFF3751 0.13 -0.8
245,540 - GFF3751 0.13 -0.2
245,689 + GFF3751 0.32 -0.1
245,689 + GFF3751 0.32 -0.2
245,689 + GFF3751 0.32 +0.5
245,689 + GFF3751 0.32 -0.8
245,690 - GFF3751 0.32 -0.6
245,690 - GFF3751 0.32 -1.5
245,690 - GFF3751 0.32 -0.1
245,690 - GFF3751 0.32 -0.0
245,690 - GFF3751 0.32 -0.3
245,690 - GFF3751 0.32 +0.1
245,914 + GFF3751 0.61 -0.4
246,091 + GFF3751 0.85 -1.1
246,091 + GFF3751 0.85 -0.4
246,091 + GFF3751 0.85 -0.1
246,091 + GFF3751 0.85 -0.0
246,092 - GFF3751 0.85 -0.2
246,092 - GFF3751 0.85 -0.4
246,092 - GFF3751 0.85 -1.6
246,132 + GFF3751 0.90 +0.4
246,133 - +0.5
246,133 - -0.1
246,372 + GFF3752 0.18 +0.0
246,372 + GFF3752 0.18 +0.4
246,372 + GFF3752 0.18 +0.3
246,409 - GFF3752 0.24 +0.3
246,409 - GFF3752 0.24 -0.4
246,409 - GFF3752 0.24 +0.5
246,409 - GFF3752 0.24 +1.9
246,420 + GFF3752 0.26 +1.7
246,420 + GFF3752 0.26 +0.3
246,421 - GFF3752 0.26 +1.4
246,421 - GFF3752 0.26 +0.3
246,421 - GFF3752 0.26 +0.6
246,421 - GFF3752 0.26 -0.7
246,421 - GFF3752 0.26 -0.1
246,421 - GFF3752 0.26 -0.0
246,421 - GFF3752 0.26 +0.8
246,421 - GFF3752 0.26 +0.7
246,516 + GFF3752 0.44 +1.0
246,558 + GFF3752 0.51 -1.0
246,558 + GFF3752 0.51 -0.1
246,594 + GFF3752 0.58 -1.2
246,594 + GFF3752 0.58 +0.4
246,594 + GFF3752 0.58 +0.8
246,595 - GFF3752 0.58 -0.4
246,595 - GFF3752 0.58 -1.1
246,595 - GFF3752 0.58 -0.1
246,595 - GFF3752 0.58 +1.5
246,726 + GFF3752 0.82 +1.7
246,726 + GFF3752 0.82 +2.1
246,727 - GFF3752 0.82 -0.1
246,848 + -1.3
246,848 + -0.3
246,848 + +1.3
246,848 + -0.7
246,848 + -1.1
246,848 + +0.2
246,848 + +0.0
246,848 + +0.3
246,848 + +0.7
246,848 + -0.2
246,848 + -0.1
246,848 + -0.9
246,848 + +0.7
246,848 + -0.2
246,848 + +0.1
246,848 + +0.5
246,849 - +0.5
246,849 - -0.4
246,849 - -0.5
246,849 - +1.1
246,849 - +0.5
246,849 - -0.1
246,849 - -0.3
246,849 - +0.4
246,849 - -0.1
246,849 - -0.5
246,935 + GFF3753 0.11 -0.4
246,935 + GFF3753 0.11 -0.2
246,935 + GFF3753 0.11 -0.4
246,935 + GFF3753 0.11 -0.6
246,936 - GFF3753 0.11 +0.8
247,076 + GFF3753 0.25 +0.0
247,077 - GFF3753 0.25 -0.1
247,083 - GFF3753 0.25 +0.3
247,169 + GFF3753 0.34 -0.3
247,193 + GFF3753 0.36 -0.6
247,193 + GFF3753 0.36 -0.5
247,193 + GFF3753 0.36 +0.3
247,193 + GFF3753 0.36 +0.9
247,193 + GFF3753 0.36 +0.7

Or see this region's nucleotide sequence