Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3676 and GFF3677 overlap by 4 nucleotides GFF3677 and GFF3678 overlap by 4 nucleotides GFF3678 and GFF3679 are separated by 157 nucleotides GFF3679 and GFF3680 are separated by 4 nucleotides
GFF3676 - Outer membrane protein romA, at 177,412 to 178,608
GFF3676
GFF3677 - Proposed lipoate regulatory protein YbeD, at 178,605 to 178,913
GFF3677
GFF3678 - D-alanine aminotransferase (EC 2.6.1.21), at 178,910 to 179,803
GFF3678
GFF3679 - ATP synthase protein I, at 179,961 to 180,446
GFF3679
GFF3680 - ATP synthase F0 sector subunit a (EC 3.6.3.14), at 180,451 to 181,320
GFF3680
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.118 kb on + strand, within GFF3676 at 178.118 kb on + strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.119 kb on - strand, within GFF3676 at 178.150 kb on - strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.478 kb on + strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.479 kb on - strand, within GFF3676 at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.526 kb on + strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.527 kb on - strand at 178.529 kb on + strand at 178.529 kb on + strand at 178.705 kb on + strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.706 kb on - strand, within GFF3677 at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.943 kb on + strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.944 kb on - strand at 178.959 kb on + strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.960 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.980 kb on + strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 178.981 kb on - strand at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.008 kb on + strand, within GFF3678 at 179.009 kb on - strand, within GFF3678 at 179.043 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.511 kb on + strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.512 kb on - strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.664 kb on + strand, within GFF3678 at 179.665 kb on - strand, within GFF3678 at 179.665 kb on - strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.676 kb on + strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.677 kb on - strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.682 kb on + strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.683 kb on - strand, within GFF3678 at 179.748 kb on + strand at 179.748 kb on + strand at 179.749 kb on - strand at 179.749 kb on - strand at 179.749 kb on - strand at 179.763 kb on + strand at 179.763 kb on + strand at 179.763 kb on + strand at 179.764 kb on - strand at 179.794 kb on + strand at 179.795 kb on - strand at 179.795 kb on - strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.812 kb on + strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.813 kb on - strand at 179.904 kb on + strand at 179.904 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.908 kb on + strand at 179.909 kb on - strand at 179.909 kb on - strand at 179.910 kb on + strand at 179.910 kb on + strand at 180.174 kb on + strand, within GFF3679
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 178,118 + GFF3676 0.59 -0.2 178,118 + GFF3676 0.59 +0.3 178,119 - GFF3676 0.59 -0.7 178,119 - GFF3676 0.59 -0.4 178,119 - GFF3676 0.59 -0.4 178,119 - GFF3676 0.59 -0.7 178,150 - GFF3676 0.62 +1.1 178,478 + GFF3676 0.89 -0.6 178,478 + GFF3676 0.89 -2.0 178,478 + GFF3676 0.89 -0.0 178,478 + GFF3676 0.89 -0.1 178,478 + GFF3676 0.89 +0.5 178,478 + GFF3676 0.89 -0.9 178,478 + GFF3676 0.89 +2.1 178,478 + GFF3676 0.89 +0.1 178,478 + GFF3676 0.89 +0.2 178,478 + GFF3676 0.89 -0.6 178,478 + GFF3676 0.89 -1.1 178,478 + GFF3676 0.89 +0.2 178,478 + GFF3676 0.89 +0.1 178,478 + GFF3676 0.89 -0.6 178,478 + GFF3676 0.89 -0.1 178,478 + GFF3676 0.89 +0.3 178,478 + GFF3676 0.89 -0.1 178,478 + GFF3676 0.89 -0.5 178,478 + GFF3676 0.89 -1.0 178,479 - GFF3676 0.89 -0.7 178,479 - GFF3676 0.89 +2.7 178,479 - GFF3676 0.89 -0.9 178,479 - GFF3676 0.89 -1.0 178,479 - GFF3676 0.89 -1.4 178,479 - GFF3676 0.89 -0.5 178,479 - GFF3676 0.89 -1.0 178,479 - GFF3676 0.89 -0.4 178,479 - GFF3676 0.89 -0.4 178,479 - GFF3676 0.89 -0.3 178,479 - GFF3676 0.89 -0.4 178,479 - GFF3676 0.89 -0.1 178,479 - GFF3676 0.89 -0.5 178,479 - GFF3676 0.89 +2.1 178,479 - GFF3676 0.89 -0.4 178,479 - GFF3676 0.89 -0.8 178,479 - GFF3676 0.89 -0.7 178,479 - GFF3676 0.89 -0.3 178,479 - GFF3676 0.89 +0.0 178,479 - GFF3676 0.89 +0.2 178,479 - GFF3676 0.89 -1.1 178,479 - GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 -1.8 178,479 - GFF3676 0.89 -0.6 178,479 - GFF3676 0.89 -0.2 178,479 - GFF3676 0.89 +0.8 178,479 - GFF3676 0.89 -0.5 178,526 + +1.3 178,526 + -1.2 178,526 + -0.4 178,526 + +0.2 178,526 + -0.9 178,526 + -0.3 178,526 + -0.2 178,527 - +0.1 178,527 - -0.5 178,527 - -0.0 178,527 - -0.6 178,527 - +0.1 178,527 - +0.3 178,527 - +0.7 178,527 - +0.1 178,527 - +0.5 178,527 - -0.4 178,529 + +0.2 178,529 + -0.3 178,705 + GFF3677 0.32 +0.9 178,706 - GFF3677 0.33 -1.2 178,706 - GFF3677 0.33 -0.7 178,943 + -0.5 178,943 + -0.2 178,943 + -0.1 178,943 + -0.4 178,943 + -0.4 178,943 + -0.1 178,943 + -1.9 178,944 - -0.9 178,944 - -0.4 178,944 - -0.9 178,944 - -0.2 178,944 - -0.7 178,944 - +0.7 178,959 + +0.5 178,960 - -0.6 178,960 - -2.1 178,960 - +0.3 178,968 + -0.5 178,968 + +1.5 178,968 + -0.3 178,968 + +0.9 178,968 + -1.9 178,969 - +0.3 178,969 - +1.4 178,969 - +0.2 178,980 + -0.2 178,980 + +1.3 178,980 + +0.4 178,980 + -0.5 178,980 + -1.1 178,980 + -0.7 178,980 + -0.5 178,980 + +0.8 178,980 + -0.5 178,980 + +0.1 178,980 + -1.7 178,980 + -0.6 178,980 + -1.4 178,980 + -0.8 178,980 + -1.2 178,980 + -0.6 178,980 + -1.5 178,981 - +0.2 178,981 - -0.2 178,981 - +0.1 178,981 - +2.1 178,981 - +0.5 178,981 - +0.5 178,981 - +1.4 178,981 - -0.9 179,008 + GFF3678 0.11 -1.7 179,008 + GFF3678 0.11 -1.2 179,008 + GFF3678 0.11 -0.7 179,009 - GFF3678 0.11 +0.2 179,043 + GFF3678 0.15 +0.3 179,511 + GFF3678 0.67 -0.8 179,511 + GFF3678 0.67 -0.0 179,511 + GFF3678 0.67 -0.7 179,512 - GFF3678 0.67 -0.9 179,512 - GFF3678 0.67 -0.1 179,512 - GFF3678 0.67 +0.1 179,664 + GFF3678 0.84 +0.1 179,664 + GFF3678 0.84 +0.5 179,664 + GFF3678 0.84 +0.8 179,665 - GFF3678 0.84 +0.1 179,665 - GFF3678 0.84 -1.4 179,676 + GFF3678 0.86 +2.1 179,676 + GFF3678 0.86 -0.8 179,676 + GFF3678 0.86 -0.5 179,676 + GFF3678 0.86 +0.1 179,676 + GFF3678 0.86 -1.1 179,676 + GFF3678 0.86 -1.1 179,676 + GFF3678 0.86 +1.0 179,676 + GFF3678 0.86 -0.3 179,676 + GFF3678 0.86 -0.9 179,677 - GFF3678 0.86 -0.0 179,677 - GFF3678 0.86 -0.9 179,677 - GFF3678 0.86 +0.5 179,677 - GFF3678 0.86 +0.0 179,677 - GFF3678 0.86 +0.7 179,677 - GFF3678 0.86 -0.4 179,677 - GFF3678 0.86 -0.9 179,677 - GFF3678 0.86 +1.9 179,677 - GFF3678 0.86 +1.5 179,677 - GFF3678 0.86 +0.5 179,677 - GFF3678 0.86 +0.5 179,677 - GFF3678 0.86 -0.2 179,677 - GFF3678 0.86 +0.9 179,682 + GFF3678 0.86 -0.1 179,682 + GFF3678 0.86 -0.5 179,682 + GFF3678 0.86 -1.1 179,682 + GFF3678 0.86 -1.4 179,682 + GFF3678 0.86 -1.5 179,682 + GFF3678 0.86 -1.8 179,682 + GFF3678 0.86 -1.7 179,682 + GFF3678 0.86 +1.1 179,683 - GFF3678 0.86 -0.3 179,683 - GFF3678 0.86 -1.2 179,683 - GFF3678 0.86 -0.6 179,683 - GFF3678 0.86 -0.5 179,683 - GFF3678 0.86 -0.7 179,683 - GFF3678 0.86 -1.4 179,748 + +0.8 179,748 + -0.9 179,749 - -0.3 179,749 - -0.5 179,749 - +0.2 179,763 + -1.0 179,763 + +0.1 179,763 + +1.5 179,764 - -0.5 179,794 + -0.5 179,795 - -1.5 179,795 - -0.5 179,812 + -0.9 179,812 + -0.2 179,812 + +0.8 179,812 + +0.1 179,812 + +0.4 179,812 + +0.8 179,812 + -0.9 179,813 - -0.3 179,813 - +0.3 179,813 - +1.1 179,813 - +0.6 179,813 - -0.5 179,813 - +0.4 179,813 - +2.5 179,813 - -0.6 179,813 - -0.2 179,813 - +0.1 179,904 + +2.1 179,904 + +1.1 179,908 + +0.8 179,908 + -0.5 179,908 + -0.7 179,908 + -0.6 179,908 + -0.8 179,908 + -1.4 179,909 - -0.8 179,909 - +0.1 179,910 + +0.5 179,910 + -0.5 180,174 + GFF3679 0.44 -0.9
Or see this region's nucleotide sequence