Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3608 and GFF3609 overlap by 4 nucleotides GFF3609 and GFF3610 are separated by 268 nucleotides
GFF3608 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 121,434 to 122,510
GFF3608
GFF3609 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 122,507 to 123,328
GFF3609
GFF3610 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 123,597 to 124,370
GFF3610
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 121.558 kb on - strand, within GFF3608 at 121.591 kb on - strand, within GFF3608 at 121.591 kb on - strand, within GFF3608 at 121.680 kb on + strand, within GFF3608 at 121.803 kb on + strand, within GFF3608 at 121.803 kb on + strand, within GFF3608 at 121.803 kb on + strand, within GFF3608 at 121.804 kb on - strand, within GFF3608 at 121.804 kb on - strand, within GFF3608 at 121.804 kb on - strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.947 kb on + strand, within GFF3608 at 121.948 kb on - strand, within GFF3608 at 121.948 kb on - strand, within GFF3608 at 122.355 kb on + strand, within GFF3608 at 122.355 kb on + strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.356 kb on - strand, within GFF3608 at 122.404 kb on - strand at 122.675 kb on + strand, within GFF3609 at 122.676 kb on - strand, within GFF3609 at 122.993 kb on + strand, within GFF3609 at 122.994 kb on - strand, within GFF3609 at 123.222 kb on + strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.223 kb on - strand, within GFF3609 at 123.639 kb on + strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.640 kb on - strand at 123.680 kb on - strand, within GFF3610 at 123.703 kb on + strand, within GFF3610 at 123.704 kb on - strand, within GFF3610 at 123.822 kb on + strand, within GFF3610 at 123.823 kb on - strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.912 kb on + strand, within GFF3610 at 123.913 kb on - strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.960 kb on + strand, within GFF3610 at 123.961 kb on - strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.966 kb on + strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 123.967 kb on - strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.224 kb on + strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610 at 124.225 kb on - strand, within GFF3610
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 121,558 - GFF3608 0.12 +0.2 121,591 - GFF3608 0.15 +1.8 121,591 - GFF3608 0.15 -0.2 121,680 + GFF3608 0.23 -0.7 121,803 + GFF3608 0.34 -0.5 121,803 + GFF3608 0.34 +0.2 121,803 + GFF3608 0.34 -0.4 121,804 - GFF3608 0.34 -1.2 121,804 - GFF3608 0.34 -0.3 121,804 - GFF3608 0.34 -0.7 121,947 + GFF3608 0.48 +0.5 121,947 + GFF3608 0.48 +1.2 121,947 + GFF3608 0.48 -0.8 121,947 + GFF3608 0.48 +0.2 121,948 - GFF3608 0.48 -0.7 121,948 - GFF3608 0.48 -0.7 122,355 + GFF3608 0.86 -0.7 122,355 + GFF3608 0.86 -0.7 122,356 - GFF3608 0.86 +0.6 122,356 - GFF3608 0.86 -0.6 122,356 - GFF3608 0.86 -0.2 122,356 - GFF3608 0.86 -1.8 122,404 - -2.0 122,675 + GFF3609 0.20 +0.3 122,676 - GFF3609 0.21 +0.5 122,993 + GFF3609 0.59 +0.8 122,994 - GFF3609 0.59 +0.1 123,222 + GFF3609 0.87 +1.5 123,223 - GFF3609 0.87 +0.7 123,223 - GFF3609 0.87 -0.2 123,223 - GFF3609 0.87 +0.5 123,639 + +0.5 123,640 - +0.5 123,640 - +0.3 123,640 - -0.1 123,680 - GFF3610 0.11 -0.6 123,703 + GFF3610 0.14 -1.0 123,704 - GFF3610 0.14 -0.5 123,822 + GFF3610 0.29 -0.4 123,823 - GFF3610 0.29 -0.3 123,912 + GFF3610 0.41 +0.2 123,912 + GFF3610 0.41 -0.2 123,913 - GFF3610 0.41 -0.2 123,960 + GFF3610 0.47 -0.4 123,960 + GFF3610 0.47 -0.1 123,961 - GFF3610 0.47 +0.4 123,966 + GFF3610 0.48 +0.5 123,966 + GFF3610 0.48 +1.1 123,966 + GFF3610 0.48 +0.3 123,966 + GFF3610 0.48 -0.7 123,966 + GFF3610 0.48 -0.4 123,967 - GFF3610 0.48 +1.9 123,967 - GFF3610 0.48 -0.2 124,224 + GFF3610 0.81 +0.3 124,224 + GFF3610 0.81 -0.4 124,224 + GFF3610 0.81 -0.4 124,224 + GFF3610 0.81 -0.3 124,225 - GFF3610 0.81 -0.2 124,225 - GFF3610 0.81 +0.1 124,225 - GFF3610 0.81 +0.1 124,225 - GFF3610 0.81 -0.1
Or see this region's nucleotide sequence