Strain Fitness in Variovorax sp. SCN45 around GFF3594

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
106,224	+		GFF3593	0.60	-0.1
106,224	+		GFF3593	0.60	-1.4
106,224	+		GFF3593	0.60	-0.9
106,224	+		GFF3593	0.60	-0.2
106,225	-		GFF3593	0.60	+0.2
106,225	-		GFF3593	0.60	+0.6
106,225	-		GFF3593	0.60	+0.2
106,225	-		GFF3593	0.60	+0.7
106,482	+		GFF3593	0.72	+0.3
106,482	+		GFF3593	0.72	+0.9
106,482	+		GFF3593	0.72	-0.4
106,482	+		GFF3593	0.72	+0.4
106,482	+		GFF3593	0.72	+0.0
106,483	-		GFF3593	0.72	-0.3
106,483	-		GFF3593	0.72	+0.3
106,483	-		GFF3593	0.72	-0.6
106,483	-		GFF3593	0.72	+0.9
106,707	+		GFF3593	0.83	+0.3
106,707	+		GFF3593	0.83	-0.9
106,707	+		GFF3593	0.83	-0.5
106,707	+		GFF3593	0.83	-0.2
106,707	+		GFF3593	0.83	+0.0
106,707	+		GFF3593	0.83	+0.2
106,707	+		GFF3593	0.83	-0.2
106,707	+		GFF3593	0.83	-0.1
106,707	+		GFF3593	0.83	-0.5
106,707	+		GFF3593	0.83	-1.5
106,707	+		GFF3593	0.83	+0.3
106,708	-		GFF3593	0.84	-0.4
106,708	-		GFF3593	0.84	-0.2
106,708	-		GFF3593	0.84	-0.0
106,708	-		GFF3593	0.84	-0.1
106,708	-		GFF3593	0.84	+0.3
106,708	-		GFF3593	0.84	+0.2
106,708	-		GFF3593	0.84	-0.5
106,708	-		GFF3593	0.84	+0.1
106,708	-		GFF3593	0.84	-0.1
106,708	-		GFF3593	0.84	+0.7
106,708	-		GFF3593	0.84	-0.2
106,708	-		GFF3593	0.84	+0.6
106,708	-		GFF3593	0.84	-0.9
106,708	-		GFF3593	0.84	+0.3
106,708	-		GFF3593	0.84	+1.5
106,708	-		GFF3593	0.84	-1.1
106,776	+		GFF3593	0.87	+1.0
106,776	+		GFF3593	0.87	+0.1
106,776	+		GFF3593	0.87	-0.7
106,776	+		GFF3593	0.87	-0.4
106,776	+		GFF3593	0.87	-0.7
106,776	+		GFF3593	0.87	+0.4
106,776	+		GFF3593	0.87	+2.1
106,776	+		GFF3593	0.87	-0.4
106,776	+		GFF3593	0.87	+0.2
106,776	+		GFF3593	0.87	+0.2
106,777	-		GFF3593	0.87	-0.2
106,777	-		GFF3593	0.87	+0.1
106,777	-		GFF3593	0.87	-2.4
106,777	-		GFF3593	0.87	+0.1
106,777	-		GFF3593	0.87	+0.5
106,777	-		GFF3593	0.87	-0.1
106,777	-		GFF3593	0.87	+0.2
106,777	-		GFF3593	0.87	-0.2
106,777	-		GFF3593	0.87	-1.6
106,777	-		GFF3593	0.87	+0.0
106,777	-		GFF3593	0.87	+0.4
106,777	-		GFF3593	0.87	-0.4
106,777	-		GFF3593	0.87	-0.2
106,777	-		GFF3593	0.87	+0.0
106,777	-		GFF3593	0.87	-1.2
107,022	+				+1.5
107,022	+				+0.9
107,022	+				+0.4
107,022	+				-2.1
107,023	-				-0.0
107,023	-				+2.1
107,023	-				-0.1
107,023	-				-0.8
107,023	-				-0.2
107,040	+				-0.5
107,041	-				+1.5
107,041	-				-0.6
107,041	-				+1.0
107,041	-				+2.1
107,041	-				+1.4
107,071	+				+0.4
107,071	+				+0.3
107,071	+				+0.2
107,072	-				-0.3
107,072	-				-0.2
107,072	-				-0.4
107,072	-				+0.2
107,092	+				-0.3
107,093	-				-0.5
107,110	+				+1.3
107,110	+				+1.4
107,244	+		GFF3594	0.23	-0.6
107,244	+		GFF3594	0.23	+3.7
107,244	+		GFF3594	0.23	-0.4
107,244	+		GFF3594	0.23	-0.4
107,244	+		GFF3594	0.23	+0.1
107,245	-		GFF3594	0.23	+0.1
107,245	-		GFF3594	0.23	+0.4
107,245	-		GFF3594	0.23	-0.1
107,245	-		GFF3594	0.23	+0.4
107,245	-		GFF3594	0.23	+1.1
107,309	+		GFF3594	0.39	-0.8
107,309	+		GFF3594	0.39	+0.9
107,309	+		GFF3594	0.39	-1.5
107,309	+		GFF3594	0.39	+0.7
107,309	+		GFF3594	0.39	+0.9
107,309	+		GFF3594	0.39	+0.0
107,309	+		GFF3594	0.39	-0.6
107,309	+		GFF3594	0.39	+0.2
107,309	+		GFF3594	0.39	+2.1
107,309	+		GFF3594	0.39	+0.9
107,309	+		GFF3594	0.39	-0.2
107,309	+		GFF3594	0.39	+1.1
107,309	+		GFF3594	0.39	+1.6
107,309	+		GFF3594	0.39	-1.8
107,309	+		GFF3594	0.39	+1.5
107,309	+		GFF3594	0.39	-0.5
107,309	+		GFF3594	0.39	-0.7
107,309	+		GFF3594	0.39	-0.5
107,309	+		GFF3594	0.39	-0.3
107,310	-		GFF3594	0.39	-0.9
107,310	-		GFF3594	0.39	+0.5
107,310	-		GFF3594	0.39	-0.3
107,310	-		GFF3594	0.39	+0.5
107,310	-		GFF3594	0.39	-0.5
107,310	-		GFF3594	0.39	+0.0
107,310	-		GFF3594	0.39	+1.1
107,310	-		GFF3594	0.39	-0.7
107,310	-		GFF3594	0.39	-1.1
107,310	-		GFF3594	0.39	-0.1
107,310	-		GFF3594	0.39	+0.3
107,310	-		GFF3594	0.39	+2.1
107,310	-		GFF3594	0.39	-0.5
107,310	-		GFF3594	0.39	-0.6
107,340	+		GFF3594	0.46	+1.4
107,341	-		GFF3594	0.47	-0.1
107,457	+		GFF3594	0.75	+1.1
107,458	-		GFF3594	0.75	+0.3
107,458	-		GFF3594	0.75	+0.2
107,458	-		GFF3594	0.75	-0.5
107,493	+		GFF3594	0.83	+0.4
107,493	+		GFF3594	0.83	+0.1
107,493	+		GFF3594	0.83	-0.7
107,493	+		GFF3594	0.83	+0.1
107,494	-		GFF3594	0.84	+0.7
107,494	-		GFF3594	0.84	+0.5
107,539	+				+0.6
107,539	+				-0.2
107,539	+				-0.1
107,539	+				+0.8
107,539	+				-0.6
107,539	+				-0.4
107,539	+				-0.0
107,540	-				-0.5
107,540	-				+0.1
107,540	-				+0.2
107,581	+				-0.7
107,581	+				-1.1
107,581	+				+2.1
107,581	+				+0.3
107,582	-				-1.4
107,610	+				-2.6
107,610	+				+0.3
107,610	+				+0.9
107,610	+				+0.6
107,610	+				+0.5
107,611	-				-1.0
107,611	-				-0.5
107,611	-				+0.2
107,611	-				-2.3
107,611	-				-0.9
107,611	-				-0.8
107,611	-				+1.2
107,611	-				+0.4
107,611	-				+0.5
107,611	-				+0.1
107,707	-				-0.1
107,707	-				-0.8
107,707	-				+1.5
107,709	+				-0.2
107,709	+				+0.5
107,709	+				-0.6
107,709	+				-0.0
107,709	+				-0.2
107,709	+				+1.1
107,709	+				+0.5
107,710	-				+0.4
107,710	-				-0.6
107,710	-				+1.1
107,710	-				-0.7
107,710	-				-0.2
107,710	-				-0.1
107,710	-				-0.5
107,710	-				-0.8
107,710	-				+0.2
107,710	-				+0.1
107,710	-				-0.1
107,710	-				+0.0
107,710	-				-1.0
107,751	+				-0.2
107,766	+				-0.2
107,766	+				-0.2
107,766	+				+0.4
107,766	+				-1.5
107,767	-				-1.1
107,771	+				+0.2
107,771	+				+0.5
107,771	+				-0.9
107,771	+				+0.1
107,771	+				+0.5
107,771	+				-0.2
107,772	-				-0.3
107,772	-				+0.1
107,772	-				-0.0
107,823	-				-0.7
107,928	+				-0.2
107,928	+				+1.1
107,928	+				+0.6
107,928	+				-0.3
107,929	-				+0.5
107,976	+				-0.9
108,158	+		GFF3595	0.20	+0.3
108,158	+		GFF3595	0.20	-0.8
108,158	+		GFF3595	0.20	-0.4
108,159	-		GFF3595	0.21	+0.8
108,159	-		GFF3595	0.21	+0.1
108,204	+		GFF3595	0.27	-0.6
108,204	+		GFF3595	0.27	-0.0
108,204	+		GFF3595	0.27	-0.0
108,204	+		GFF3595	0.27	-0.6
108,204	+		GFF3595	0.27	-0.8
108,205	-		GFF3595	0.27	-0.2
108,205	-		GFF3595	0.27	-0.1
108,205	-		GFF3595	0.27	-0.4
108,219	-		GFF3595	0.29	-0.2
108,219	-		GFF3595	0.29	+0.0
108,219	-		GFF3595	0.29	-0.3
108,219	-		GFF3595	0.29	-1.4
108,262	+		GFF3595	0.35	-0.1
108,262	+		GFF3595	0.35	-1.4
108,262	+		GFF3595	0.35	-0.3
108,262	+		GFF3595	0.35	+0.2
108,263	-		GFF3595	0.35	-1.6
108,263	-		GFF3595	0.35	-0.2
108,263	-		GFF3595	0.35	-0.2
108,263	-		GFF3595	0.35	+0.1
108,314	+		GFF3595	0.43	+0.5
108,314	+		GFF3595	0.43	-0.6
108,314	+		GFF3595	0.43	-0.2
108,314	+		GFF3595	0.43	-0.5
108,314	+		GFF3595	0.43	-0.1
108,314	+		GFF3595	0.43	-0.4
108,314	+		GFF3595	0.43	-0.2
108,314	+		GFF3595	0.43	-0.1
108,314	+		GFF3595	0.43	-0.6
108,314	+		GFF3595	0.43	-0.2
108,314	+		GFF3595	0.43	-0.7
108,314	+		GFF3595	0.43	-1.2
108,314	+		GFF3595	0.43	+0.5
108,314	+		GFF3595	0.43	-0.4
108,315	-		GFF3595	0.43	-0.4
108,315	-		GFF3595	0.43	-1.7
108,315	-		GFF3595	0.43	-0.4
108,315	-		GFF3595	0.43	-0.6
108,315	-		GFF3595	0.43	-0.1
108,315	-		GFF3595	0.43	-0.2
108,315	-		GFF3595	0.43	+0.7
108,315	-		GFF3595	0.43	+0.7
108,315	-		GFF3595	0.43	-0.4
108,315	-		GFF3595	0.43	-0.1
108,315	-		GFF3595	0.43	+1.3
108,315	-		GFF3595	0.43	-0.6
108,331	-		GFF3595	0.45	+1.5
108,334	+		GFF3595	0.45	+0.2
108,334	+		GFF3595	0.45	-0.7
108,334	+		GFF3595	0.45	-0.3
108,334	+		GFF3595	0.45	-0.3
108,334	+		GFF3595	0.45	+1.5
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	+0.1
108,334	+		GFF3595	0.45	-0.9
108,334	+		GFF3595	0.45	+0.7
108,334	+		GFF3595	0.45	-0.2
108,334	+		GFF3595	0.45	-0.3
108,335	-		GFF3595	0.45	-0.1
108,335	-		GFF3595	0.45	-0.2
108,335	-		GFF3595	0.45	-0.7
108,335	-		GFF3595	0.45	-0.6
108,335	-		GFF3595	0.45	-0.3
108,373	+		GFF3595	0.51	-0.5
108,373	+		GFF3595	0.51	+0.8
108,373	+		GFF3595	0.51	+0.6
108,373	+		GFF3595	0.51	+0.0
108,373	+		GFF3595	0.51	-0.7
108,373	+		GFF3595	0.51	+0.4
108,373	+		GFF3595	0.51	-0.7
108,373	+		GFF3595	0.51	-0.2
108,373	+		GFF3595	0.51	+0.2
108,374	-		GFF3595	0.51	-0.8
108,374	-		GFF3595	0.51	-0.4
108,374	-		GFF3595	0.51	+0.1
108,374	-		GFF3595	0.51	-2.8
108,374	-		GFF3595	0.51	+0.6
108,374	-		GFF3595	0.51	-0.3
108,374	-		GFF3595	0.51	-0.3
108,472	+		GFF3595	0.65	+0.7
108,473	-		GFF3595	0.65	-0.0
108,540	-		GFF3595	0.74	+0.4
108,540	-		GFF3595	0.74	-0.5
108,560	-		GFF3595	0.77	-0.4