Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3417 and GFF3418 overlap by 8 nucleotides GFF3418 and GFF3419 are separated by 74 nucleotides GFF3419 and GFF3420 overlap by 4 nucleotides GFF3420 and GFF3421 are separated by 100 nucleotides
GFF3417 - Alkanesulfonates transport system permease protein, at 240,959 to 241,729
GFF3417
GFF3418 - ABC transporter, ATP-binding protein (cluster 1, maltose/g3p/polyamine/iron); ABC transporter, ATP-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 241,722 to 242,501
GFF3418
GFF3419 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 242,576 to 243,535
GFF3419
GFF3420 - Transcriptional regulator, AcrR family, at 243,532 to 244,284
GFF3420
GFF3421 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 244,385 to 246,388
GFF3421
Position (kb) 242
243
244 Strain fitness (log2 ratio) -2
-1
0
1
2 at 241.653 kb on + strand at 241.654 kb on - strand at 241.670 kb on + strand at 241.775 kb on - strand at 241.900 kb on + strand, within GFF3418 at 241.900 kb on + strand, within GFF3418 at 241.901 kb on - strand, within GFF3418 at 241.901 kb on - strand, within GFF3418 at 241.940 kb on + strand, within GFF3418 at 242.334 kb on + strand, within GFF3418 at 242.334 kb on + strand, within GFF3418 at 242.730 kb on + strand, within GFF3419 at 242.730 kb on + strand, within GFF3419 at 242.730 kb on + strand, within GFF3419 at 242.730 kb on + strand, within GFF3419 at 242.730 kb on + strand, within GFF3419 at 242.731 kb on - strand, within GFF3419 at 242.731 kb on - strand, within GFF3419 at 242.731 kb on - strand, within GFF3419 at 242.905 kb on - strand, within GFF3419 at 243.042 kb on + strand, within GFF3419 at 243.117 kb on + strand, within GFF3419 at 243.369 kb on + strand, within GFF3419 at 243.369 kb on + strand, within GFF3419 at 243.370 kb on - strand, within GFF3419 at 243.370 kb on - strand, within GFF3419 at 243.797 kb on + strand, within GFF3420 at 243.798 kb on - strand, within GFF3420 at 243.798 kb on - strand, within GFF3420 at 243.798 kb on - strand, within GFF3420 at 243.821 kb on + strand, within GFF3420 at 243.860 kb on + strand, within GFF3420 at 243.860 kb on + strand, within GFF3420 at 243.860 kb on + strand, within GFF3420 at 243.887 kb on + strand, within GFF3420 at 243.888 kb on - strand, within GFF3420 at 243.891 kb on - strand, within GFF3420 at 244.070 kb on + strand, within GFF3420 at 244.070 kb on + strand, within GFF3420 at 244.071 kb on - strand, within GFF3420 at 244.073 kb on + strand, within GFF3420 at 244.073 kb on + strand, within GFF3420 at 244.073 kb on + strand, within GFF3420 at 244.073 kb on + strand, within GFF3420 at 244.073 kb on + strand, within GFF3420 at 244.073 kb on + strand, within GFF3420 at 244.073 kb on + strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.074 kb on - strand, within GFF3420 at 244.076 kb on + strand, within GFF3420 at 244.077 kb on - strand, within GFF3420 at 244.373 kb on + strand at 244.374 kb on - strand at 244.384 kb on + strand at 244.384 kb on + strand at 244.384 kb on + strand at 244.384 kb on + strand at 244.418 kb on + strand at 244.419 kb on - strand at 244.463 kb on + strand at 244.463 kb on + strand at 244.464 kb on - strand at 244.464 kb on - strand at 244.464 kb on - strand at 244.464 kb on - strand at 244.526 kb on + strand at 244.526 kb on + strand at 244.526 kb on + strand at 244.526 kb on + strand at 244.527 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 241,653 + -0.2 241,654 - +0.0 241,670 + -0.1 241,775 - -0.1 241,900 + GFF3418 0.23 -0.0 241,900 + GFF3418 0.23 -0.9 241,901 - GFF3418 0.23 +0.6 241,901 - GFF3418 0.23 +0.5 241,940 + GFF3418 0.28 -0.2 242,334 + GFF3418 0.78 -0.9 242,334 + GFF3418 0.78 -0.2 242,730 + GFF3419 0.16 +0.8 242,730 + GFF3419 0.16 +0.6 242,730 + GFF3419 0.16 +2.2 242,730 + GFF3419 0.16 +0.2 242,730 + GFF3419 0.16 +0.9 242,731 - GFF3419 0.16 +0.4 242,731 - GFF3419 0.16 -0.5 242,731 - GFF3419 0.16 +1.0 242,905 - GFF3419 0.34 +0.7 243,042 + GFF3419 0.49 -1.4 243,117 + GFF3419 0.56 -1.9 243,369 + GFF3419 0.83 -0.4 243,369 + GFF3419 0.83 +0.8 243,370 - GFF3419 0.83 +0.1 243,370 - GFF3419 0.83 -0.5 243,797 + GFF3420 0.35 -0.6 243,798 - GFF3420 0.35 +0.8 243,798 - GFF3420 0.35 -0.1 243,798 - GFF3420 0.35 -0.1 243,821 + GFF3420 0.38 -0.6 243,860 + GFF3420 0.44 -0.5 243,860 + GFF3420 0.44 +0.4 243,860 + GFF3420 0.44 -0.3 243,887 + GFF3420 0.47 -0.1 243,888 - GFF3420 0.47 +1.7 243,891 - GFF3420 0.48 -1.0 244,070 + GFF3420 0.71 -0.4 244,070 + GFF3420 0.71 -0.2 244,071 - GFF3420 0.72 -0.9 244,073 + GFF3420 0.72 -0.3 244,073 + GFF3420 0.72 -0.1 244,073 + GFF3420 0.72 -1.2 244,073 + GFF3420 0.72 +0.7 244,073 + GFF3420 0.72 +0.8 244,073 + GFF3420 0.72 +0.6 244,073 + GFF3420 0.72 +0.6 244,074 - GFF3420 0.72 +0.5 244,074 - GFF3420 0.72 -0.8 244,074 - GFF3420 0.72 +0.6 244,074 - GFF3420 0.72 -1.1 244,074 - GFF3420 0.72 -0.3 244,074 - GFF3420 0.72 +1.7 244,074 - GFF3420 0.72 +0.3 244,074 - GFF3420 0.72 -0.2 244,076 + GFF3420 0.72 +0.1 244,077 - GFF3420 0.72 -0.4 244,373 + -0.4 244,374 - +0.1 244,384 + +0.2 244,384 + +0.2 244,384 + +1.6 244,384 + +0.6 244,418 + -2.5 244,419 - +0.2 244,463 + +1.2 244,463 + +0.5 244,464 - -0.4 244,464 - +1.4 244,464 - +0.8 244,464 - +0.1 244,526 + +0.2 244,526 + -0.7 244,526 + -0.5 244,526 + -1.0 244,527 - +0.1
Or see this region's nucleotide sequence