Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3407 and GFF3408 are separated by 72 nucleotides GFF3408 and GFF3409 are separated by 184 nucleotides GFF3409 and GFF3410 are separated by 113 nucleotides
GFF3407 - MaoC domain protein, at 231,373 to 231,816
GFF3407
GFF3408 - hypothetical protein, at 231,889 to 232,320
GFF3408
GFF3409 - Probable lipoprotein signal peptide, at 232,505 to 233,539
GFF3409
GFF3410 - Transcriptional regulator, AraC family, at 233,653 to 234,780
GFF3410
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.543 kb on + strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.544 kb on - strand, within GFF3407 at 231.891 kb on - strand at 232.339 kb on + strand at 232.339 kb on + strand at 232.339 kb on + strand at 232.340 kb on - strand at 232.448 kb on + strand at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.079 kb on + strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.080 kb on - strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.208 kb on + strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.209 kb on - strand, within GFF3409 at 233.415 kb on + strand, within GFF3409 at 233.415 kb on + strand, within GFF3409 at 233.415 kb on + strand, within GFF3409 at 233.415 kb on + strand, within GFF3409 at 233.416 kb on - strand, within GFF3409 at 233.416 kb on - strand, within GFF3409 at 233.416 kb on - strand, within GFF3409 at 233.416 kb on - strand, within GFF3409 at 233.416 kb on - strand, within GFF3409 at 233.416 kb on - strand, within GFF3409 at 233.650 kb on - strand at 233.650 kb on - strand at 233.684 kb on + strand at 233.894 kb on + strand, within GFF3410 at 234.257 kb on + strand, within GFF3410 at 234.310 kb on + strand, within GFF3410 at 234.310 kb on + strand, within GFF3410 at 234.310 kb on + strand, within GFF3410 at 234.311 kb on - strand, within GFF3410 at 234.311 kb on - strand, within GFF3410
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 231,543 + GFF3407 0.38 +0.6 231,543 + GFF3407 0.38 +0.4 231,543 + GFF3407 0.38 +0.1 231,543 + GFF3407 0.38 -1.0 231,543 + GFF3407 0.38 -0.9 231,543 + GFF3407 0.38 +0.2 231,543 + GFF3407 0.38 -0.5 231,543 + GFF3407 0.38 -0.9 231,543 + GFF3407 0.38 -0.7 231,543 + GFF3407 0.38 +0.1 231,544 - GFF3407 0.39 -0.2 231,544 - GFF3407 0.39 -1.1 231,544 - GFF3407 0.39 -0.3 231,544 - GFF3407 0.39 -0.2 231,544 - GFF3407 0.39 -0.2 231,544 - GFF3407 0.39 -0.3 231,544 - GFF3407 0.39 -0.0 231,544 - GFF3407 0.39 -0.3 231,891 - -0.1 232,339 + -0.2 232,339 + +1.8 232,339 + +0.0 232,340 - -0.4 232,448 + +2.2 233,079 + GFF3409 0.55 -0.1 233,079 + GFF3409 0.55 -0.1 233,079 + GFF3409 0.55 +1.2 233,079 + GFF3409 0.55 -0.3 233,079 + GFF3409 0.55 +0.0 233,079 + GFF3409 0.55 +0.5 233,079 + GFF3409 0.55 -0.7 233,079 + GFF3409 0.55 +0.3 233,079 + GFF3409 0.55 -1.3 233,080 - GFF3409 0.56 +0.1 233,080 - GFF3409 0.56 +1.6 233,080 - GFF3409 0.56 -0.2 233,080 - GFF3409 0.56 -0.2 233,208 + GFF3409 0.68 +0.3 233,208 + GFF3409 0.68 +0.3 233,208 + GFF3409 0.68 +0.1 233,208 + GFF3409 0.68 -0.3 233,208 + GFF3409 0.68 -1.3 233,208 + GFF3409 0.68 -0.1 233,208 + GFF3409 0.68 -2.6 233,208 + GFF3409 0.68 -0.2 233,208 + GFF3409 0.68 +0.6 233,209 - GFF3409 0.68 +1.2 233,209 - GFF3409 0.68 -0.4 233,209 - GFF3409 0.68 -0.8 233,209 - GFF3409 0.68 -0.3 233,209 - GFF3409 0.68 -0.2 233,209 - GFF3409 0.68 +0.3 233,209 - GFF3409 0.68 -0.1 233,415 + GFF3409 0.88 +4.7 233,415 + GFF3409 0.88 -0.2 233,415 + GFF3409 0.88 +0.6 233,415 + GFF3409 0.88 +0.9 233,416 - GFF3409 0.88 -1.4 233,416 - GFF3409 0.88 -0.4 233,416 - GFF3409 0.88 -0.3 233,416 - GFF3409 0.88 +0.1 233,416 - GFF3409 0.88 -0.1 233,416 - GFF3409 0.88 -0.4 233,650 - -1.1 233,650 - -0.2 233,684 + -0.4 233,894 + GFF3410 0.21 -0.2 234,257 + GFF3410 0.54 +0.5 234,310 + GFF3410 0.58 -0.6 234,310 + GFF3410 0.58 -0.8 234,310 + GFF3410 0.58 -0.7 234,311 - GFF3410 0.58 +1.4 234,311 - GFF3410 0.58 +0.2
Or see this region's nucleotide sequence