Strain Fitness in Variovorax sp. SCN45 around GFF3396

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3395 and GFF3396 overlap by 4 nucleotidesGFF3396 and GFF3397 are separated by 150 nucleotides GFF3395 - Benzoate ABC transporter, permease protein 2, at 217,711 to 218,661 GFF3395 GFF3396 - Benzoate ABC transporter, permease protein 1, at 218,658 to 219,530 GFF3396 GFF3397 - Benzoate ABC transporter, substrate-binding protein, at 219,681 to 220,853 GFF3397 Position (kb) 218 219 220Strain fitness (log2 ratio) -2 -1 0 1 2at 218.054 kb on + strand, within GFF3395at 218.055 kb on - strand, within GFF3395at 218.160 kb on - strand, within GFF3395at 218.189 kb on + strand, within GFF3395at 218.243 kb on + strand, within GFF3395at 218.243 kb on + strand, within GFF3395at 218.243 kb on + strand, within GFF3395at 218.243 kb on + strand, within GFF3395at 218.243 kb on + strand, within GFF3395at 218.243 kb on + strand, within GFF3395at 218.244 kb on - strand, within GFF3395at 218.244 kb on - strand, within GFF3395at 218.244 kb on - strand, within GFF3395at 218.244 kb on - strand, within GFF3395at 218.244 kb on - strand, within GFF3395at 218.244 kb on - strand, within GFF3395at 218.244 kb on - strand, within GFF3395at 218.249 kb on + strand, within GFF3395at 218.249 kb on + strand, within GFF3395at 218.249 kb on + strand, within GFF3395at 218.249 kb on + strand, within GFF3395at 218.250 kb on - strand, within GFF3395at 218.250 kb on - strand, within GFF3395at 218.336 kb on + strand, within GFF3395at 218.336 kb on + strand, within GFF3395at 218.337 kb on - strand, within GFF3395at 218.382 kb on - strand, within GFF3395at 218.382 kb on - strand, within GFF3395at 218.382 kb on - strand, within GFF3395at 218.462 kb on + strand, within GFF3395at 218.462 kb on + strand, within GFF3395at 218.463 kb on - strand, within GFF3395at 218.477 kb on + strand, within GFF3395at 218.477 kb on + strand, within GFF3395at 218.585 kb on + strandat 218.585 kb on + strandat 218.585 kb on + strandat 218.585 kb on + strandat 218.585 kb on + strandat 218.585 kb on + strandat 218.585 kb on + strandat 218.586 kb on - strandat 218.586 kb on - strandat 218.586 kb on - strandat 218.586 kb on - strandat 218.586 kb on - strandat 218.719 kb on + strandat 218.719 kb on + strandat 218.719 kb on + strandat 218.719 kb on + strandat 218.720 kb on - strandat 218.953 kb on + strand, within GFF3396at 218.953 kb on + strand, within GFF3396at 219.052 kb on + strand, within GFF3396at 219.052 kb on + strand, within GFF3396at 219.053 kb on - strand, within GFF3396at 219.109 kb on + strand, within GFF3396at 219.109 kb on + strand, within GFF3396at 219.110 kb on - strand, within GFF3396at 219.226 kb on + strand, within GFF3396at 219.227 kb on - strand, within GFF3396at 219.263 kb on - strand, within GFF3396at 219.268 kb on + strand, within GFF3396at 219.268 kb on + strand, within GFF3396at 219.268 kb on + strand, within GFF3396at 219.269 kb on - strand, within GFF3396at 219.269 kb on - strand, within GFF3396at 219.295 kb on + strand, within GFF3396at 219.382 kb on + strand, within GFF3396at 219.382 kb on + strand, within GFF3396at 219.382 kb on + strand, within GFF3396at 219.383 kb on - strand, within GFF3396at 219.383 kb on - strand, within GFF3396at 219.383 kb on - strand, within GFF3396at 219.397 kb on + strand, within GFF3396at 219.397 kb on + strand, within GFF3396at 219.397 kb on + strand, within GFF3396at 219.398 kb on - strand, within GFF3396at 219.682 kb on + strandat 219.682 kb on + strandat 219.682 kb on + strandat 219.683 kb on - strandat 219.683 kb on - strandat 219.683 kb on - strandat 219.769 kb on + strandat 219.769 kb on + strandat 219.906 kb on + strand, within GFF3397at 219.906 kb on + strand, within GFF3397at 219.906 kb on + strand, within GFF3397at 219.907 kb on - strand, within GFF3397at 219.907 kb on - strand, within GFF3397at 219.925 kb on + strand, within GFF3397at 219.940 kb on + strand, within GFF3397at 219.940 kb on + strand, within GFF3397at 219.973 kb on + strand, within GFF3397at 220.022 kb on - strand, within GFF3397at 220.180 kb on + strand, within GFF3397at 220.180 kb on + strand, within GFF3397at 220.181 kb on - strand, within GFF3397at 220.330 kb on + strand, within GFF3397at 220.396 kb on + strand, within GFF3397

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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218,054 + GFF3395 0.36 +1.2
218,055 - GFF3395 0.36 +0.4
218,160 - GFF3395 0.47 +0.9
218,189 + GFF3395 0.50 -0.7
218,243 + GFF3395 0.56 +2.4
218,243 + GFF3395 0.56 -0.8
218,243 + GFF3395 0.56 +1.2
218,243 + GFF3395 0.56 +0.7
218,243 + GFF3395 0.56 +0.3
218,243 + GFF3395 0.56 -0.8
218,244 - GFF3395 0.56 -0.5
218,244 - GFF3395 0.56 +0.1
218,244 - GFF3395 0.56 +0.4
218,244 - GFF3395 0.56 +1.8
218,244 - GFF3395 0.56 -0.0
218,244 - GFF3395 0.56 +0.4
218,244 - GFF3395 0.56 -2.4
218,249 + GFF3395 0.57 +0.3
218,249 + GFF3395 0.57 +1.0
218,249 + GFF3395 0.57 -0.0
218,249 + GFF3395 0.57 +1.6
218,250 - GFF3395 0.57 -1.1
218,250 - GFF3395 0.57 -1.2
218,336 + GFF3395 0.66 +1.0
218,336 + GFF3395 0.66 +0.6
218,337 - GFF3395 0.66 -0.2
218,382 - GFF3395 0.71 -0.8
218,382 - GFF3395 0.71 +0.7
218,382 - GFF3395 0.71 -0.6
218,462 + GFF3395 0.79 -0.9
218,462 + GFF3395 0.79 -0.5
218,463 - GFF3395 0.79 +0.2
218,477 + GFF3395 0.81 -0.3
218,477 + GFF3395 0.81 -1.2
218,585 + +0.6
218,585 + +1.0
218,585 + -0.2
218,585 + -0.7
218,585 + +1.5
218,585 + -0.6
218,585 + -1.8
218,586 - -0.6
218,586 - -0.8
218,586 - -0.0
218,586 - -0.7
218,586 - -0.2
218,719 + -0.6
218,719 + -0.0
218,719 + +0.2
218,719 + -0.6
218,720 - -0.4
218,953 + GFF3396 0.34 -0.0
218,953 + GFF3396 0.34 +1.1
219,052 + GFF3396 0.45 -0.6
219,052 + GFF3396 0.45 -1.2
219,053 - GFF3396 0.45 +0.3
219,109 + GFF3396 0.52 -1.2
219,109 + GFF3396 0.52 -0.7
219,110 - GFF3396 0.52 -0.3
219,226 + GFF3396 0.65 -1.4
219,227 - GFF3396 0.65 +2.0
219,263 - GFF3396 0.69 -0.3
219,268 + GFF3396 0.70 -0.8
219,268 + GFF3396 0.70 -0.8
219,268 + GFF3396 0.70 -0.1
219,269 - GFF3396 0.70 -0.0
219,269 - GFF3396 0.70 +0.6
219,295 + GFF3396 0.73 -0.4
219,382 + GFF3396 0.83 -0.2
219,382 + GFF3396 0.83 +1.1
219,382 + GFF3396 0.83 +0.4
219,383 - GFF3396 0.83 -0.3
219,383 - GFF3396 0.83 +0.6
219,383 - GFF3396 0.83 +0.3
219,397 + GFF3396 0.85 +0.8
219,397 + GFF3396 0.85 +0.3
219,397 + GFF3396 0.85 +0.4
219,398 - GFF3396 0.85 +0.0
219,682 + +1.0
219,682 + +0.5
219,682 + +0.5
219,683 - +0.8
219,683 - -0.6
219,683 - -0.3
219,769 + -0.7
219,769 + -0.0
219,906 + GFF3397 0.19 -2.0
219,906 + GFF3397 0.19 -1.4
219,906 + GFF3397 0.19 -0.1
219,907 - GFF3397 0.19 -0.9
219,907 - GFF3397 0.19 -1.1
219,925 + GFF3397 0.21 -1.2
219,940 + GFF3397 0.22 -0.5
219,940 + GFF3397 0.22 -0.7
219,973 + GFF3397 0.25 +0.6
220,022 - GFF3397 0.29 +2.3
220,180 + GFF3397 0.43 -0.3
220,180 + GFF3397 0.43 +0.5
220,181 - GFF3397 0.43 -0.5
220,330 + GFF3397 0.55 -1.6
220,396 + GFF3397 0.61 +0.1

Or see this region's nucleotide sequence