Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3246 and GFF3247 are separated by 123 nucleotides GFF3247 and GFF3248 are separated by 180 nucleotides
GFF3246 - hypothetical protein, at 60,778 to 62,268
GFF3246
GFF3247 - FIG027190: Putative transmembrane protein, at 62,392 to 63,441
GFF3247
GFF3248 - NADP-dependent malic enzyme (EC 1.1.1.40), at 63,622 to 65,970
GFF3248
Position (kb) 62
63
64 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.679 kb on + strand, within GFF3246 at 61.703 kb on + strand, within GFF3246 at 61.704 kb on - strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.835 kb on + strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.836 kb on - strand, within GFF3246 at 61.861 kb on - strand, within GFF3246 at 61.861 kb on - strand, within GFF3246 at 61.861 kb on - strand, within GFF3246 at 61.928 kb on + strand, within GFF3246 at 61.928 kb on + strand, within GFF3246 at 62.009 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.015 kb on + strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.016 kb on - strand, within GFF3246 at 62.238 kb on - strand at 62.240 kb on + strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.241 kb on - strand at 62.270 kb on + strand at 62.307 kb on - strand at 62.308 kb on - strand at 62.337 kb on + strand at 62.338 kb on - strand at 62.364 kb on - strand at 62.364 kb on - strand at 62.393 kb on + strand at 62.394 kb on - strand at 62.394 kb on - strand at 62.703 kb on - strand, within GFF3247 at 62.703 kb on - strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.984 kb on + strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 62.985 kb on - strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.047 kb on + strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.048 kb on - strand, within GFF3247 at 63.155 kb on + strand, within GFF3247 at 63.155 kb on + strand, within GFF3247 at 63.155 kb on + strand, within GFF3247 at 63.156 kb on - strand, within GFF3247 at 63.207 kb on - strand, within GFF3247 at 63.207 kb on - strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.242 kb on + strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.243 kb on - strand, within GFF3247 at 63.428 kb on + strand at 63.488 kb on + strand at 63.489 kb on - strand at 63.489 kb on - strand at 63.489 kb on - strand at 63.553 kb on + strand at 63.553 kb on + strand at 63.554 kb on - strand at 63.576 kb on + strand at 63.576 kb on + strand at 63.576 kb on + strand at 63.576 kb on + strand at 63.577 kb on - strand at 63.577 kb on - strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.613 kb on + strand at 63.614 kb on - strand at 63.614 kb on - strand at 63.614 kb on - strand at 63.703 kb on + strand at 63.703 kb on + strand at 63.703 kb on + strand at 63.704 kb on - strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.847 kb on + strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 63.848 kb on - strand at 64.102 kb on + strand, within GFF3248 at 64.102 kb on + strand, within GFF3248 at 64.102 kb on + strand, within GFF3248 at 64.102 kb on + strand, within GFF3248 at 64.103 kb on - strand, within GFF3248 at 64.103 kb on - strand, within GFF3248 at 64.103 kb on - strand, within GFF3248 at 64.103 kb on - strand, within GFF3248 at 64.103 kb on - strand, within GFF3248 at 64.103 kb on - strand, within GFF3248 at 64.103 kb on - strand, within GFF3248 at 64.345 kb on + strand, within GFF3248 at 64.345 kb on + strand, within GFF3248 at 64.345 kb on + strand, within GFF3248 at 64.345 kb on + strand, within GFF3248 at 64.345 kb on + strand, within GFF3248 at 64.346 kb on - strand, within GFF3248 at 64.346 kb on - strand, within GFF3248 at 64.346 kb on - strand, within GFF3248 at 64.346 kb on - strand, within GFF3248
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 61,679 + GFF3246 0.60 +0.5 61,703 + GFF3246 0.62 +0.6 61,704 - GFF3246 0.62 -0.4 61,835 + GFF3246 0.71 -1.3 61,835 + GFF3246 0.71 -0.5 61,835 + GFF3246 0.71 +2.2 61,835 + GFF3246 0.71 -1.8 61,836 - GFF3246 0.71 -0.2 61,836 - GFF3246 0.71 -0.5 61,836 - GFF3246 0.71 -0.1 61,836 - GFF3246 0.71 -0.8 61,836 - GFF3246 0.71 -1.8 61,836 - GFF3246 0.71 -0.5 61,861 - GFF3246 0.73 +0.3 61,861 - GFF3246 0.73 -0.9 61,861 - GFF3246 0.73 -0.2 61,928 + GFF3246 0.77 -0.5 61,928 + GFF3246 0.77 -0.3 62,009 + GFF3246 0.83 -0.4 62,015 + GFF3246 0.83 +0.1 62,015 + GFF3246 0.83 -0.5 62,015 + GFF3246 0.83 +0.6 62,015 + GFF3246 0.83 +0.5 62,015 + GFF3246 0.83 -1.8 62,015 + GFF3246 0.83 -0.3 62,015 + GFF3246 0.83 +0.1 62,016 - GFF3246 0.83 +0.2 62,016 - GFF3246 0.83 -0.7 62,016 - GFF3246 0.83 +0.5 62,016 - GFF3246 0.83 +0.5 62,016 - GFF3246 0.83 -1.3 62,016 - GFF3246 0.83 +0.2 62,016 - GFF3246 0.83 -0.0 62,016 - GFF3246 0.83 +0.3 62,238 - +0.1 62,240 + -0.5 62,241 - -0.9 62,241 - -1.4 62,241 - +1.4 62,241 - +1.0 62,241 - +0.2 62,241 - +1.2 62,270 + -0.4 62,307 - -0.3 62,308 - +0.5 62,337 + +0.3 62,338 - -1.2 62,364 - +0.6 62,364 - -0.3 62,393 + +0.6 62,394 - +0.4 62,394 - -0.2 62,703 - GFF3247 0.30 -0.9 62,703 - GFF3247 0.30 -1.1 62,984 + GFF3247 0.56 -0.7 62,984 + GFF3247 0.56 -0.6 62,984 + GFF3247 0.56 +0.2 62,984 + GFF3247 0.56 -1.0 62,984 + GFF3247 0.56 -0.6 62,984 + GFF3247 0.56 +0.6 62,984 + GFF3247 0.56 -0.8 62,984 + GFF3247 0.56 -1.1 62,984 + GFF3247 0.56 -0.1 62,984 + GFF3247 0.56 -0.7 62,984 + GFF3247 0.56 -2.1 62,984 + GFF3247 0.56 -1.0 62,984 + GFF3247 0.56 -0.1 62,985 - GFF3247 0.56 -0.1 62,985 - GFF3247 0.56 -0.3 62,985 - GFF3247 0.56 -0.4 62,985 - GFF3247 0.56 -0.8 62,985 - GFF3247 0.56 -0.9 62,985 - GFF3247 0.56 -0.4 62,985 - GFF3247 0.56 +0.2 62,985 - GFF3247 0.56 +0.1 62,985 - GFF3247 0.56 -0.7 62,985 - GFF3247 0.56 +0.2 62,985 - GFF3247 0.56 -0.4 63,047 + GFF3247 0.62 -0.9 63,047 + GFF3247 0.62 +0.6 63,047 + GFF3247 0.62 -0.8 63,047 + GFF3247 0.62 -0.6 63,047 + GFF3247 0.62 -0.1 63,047 + GFF3247 0.62 -1.1 63,047 + GFF3247 0.62 -0.5 63,047 + GFF3247 0.62 -0.4 63,047 + GFF3247 0.62 -0.5 63,047 + GFF3247 0.62 -0.2 63,047 + GFF3247 0.62 +0.4 63,047 + GFF3247 0.62 +1.4 63,048 - GFF3247 0.62 -0.9 63,048 - GFF3247 0.62 -0.0 63,048 - GFF3247 0.62 +0.2 63,048 - GFF3247 0.62 +0.8 63,048 - GFF3247 0.62 -2.0 63,048 - GFF3247 0.62 +0.8 63,048 - GFF3247 0.62 -0.3 63,155 + GFF3247 0.73 -0.6 63,155 + GFF3247 0.73 +0.4 63,155 + GFF3247 0.73 +0.4 63,156 - GFF3247 0.73 -0.4 63,207 - GFF3247 0.78 -0.3 63,207 - GFF3247 0.78 -0.4 63,242 + GFF3247 0.81 -1.2 63,242 + GFF3247 0.81 +0.1 63,242 + GFF3247 0.81 -0.8 63,242 + GFF3247 0.81 -0.9 63,242 + GFF3247 0.81 -0.6 63,242 + GFF3247 0.81 +0.3 63,242 + GFF3247 0.81 +0.2 63,242 + GFF3247 0.81 -0.8 63,242 + GFF3247 0.81 +0.3 63,242 + GFF3247 0.81 -1.1 63,242 + GFF3247 0.81 -1.0 63,242 + GFF3247 0.81 -1.7 63,242 + GFF3247 0.81 -0.5 63,242 + GFF3247 0.81 -0.3 63,243 - GFF3247 0.81 -0.4 63,243 - GFF3247 0.81 -0.3 63,243 - GFF3247 0.81 +1.4 63,243 - GFF3247 0.81 +0.3 63,243 - GFF3247 0.81 -2.0 63,243 - GFF3247 0.81 +0.3 63,243 - GFF3247 0.81 +1.2 63,243 - GFF3247 0.81 -0.7 63,243 - GFF3247 0.81 -0.5 63,243 - GFF3247 0.81 -0.7 63,243 - GFF3247 0.81 -0.1 63,243 - GFF3247 0.81 -1.4 63,243 - GFF3247 0.81 +1.4 63,243 - GFF3247 0.81 -0.5 63,243 - GFF3247 0.81 +0.4 63,243 - GFF3247 0.81 -2.2 63,428 + -0.1 63,488 + -0.6 63,489 - -0.9 63,489 - +0.7 63,489 - -0.1 63,553 + +1.1 63,553 + -0.7 63,554 - -0.1 63,576 + -1.1 63,576 + +0.4 63,576 + -0.4 63,576 + -0.8 63,577 - -0.3 63,577 - -0.3 63,613 + -0.7 63,613 + -0.8 63,613 + -1.0 63,613 + +0.9 63,613 + +0.5 63,613 + -1.0 63,613 + +0.2 63,613 + +0.1 63,613 + -0.3 63,613 + +0.1 63,613 + +0.1 63,614 - -0.4 63,614 - +0.8 63,614 - -0.3 63,703 + -0.2 63,703 + +0.6 63,703 + -0.2 63,704 - +0.5 63,847 + -0.3 63,847 + -0.7 63,847 + -0.0 63,847 + +0.0 63,847 + +0.9 63,847 + +1.2 63,847 + -1.1 63,847 + +1.2 63,847 + +0.1 63,847 + -1.6 63,847 + -0.7 63,848 - +0.4 63,848 - -0.5 63,848 - -0.7 63,848 - -0.5 63,848 - -1.3 63,848 - -1.4 63,848 - +0.3 63,848 - -0.8 63,848 - -1.0 63,848 - +0.2 63,848 - +0.4 63,848 - -0.2 63,848 - -0.2 64,102 + GFF3248 0.20 -0.0 64,102 + GFF3248 0.20 +0.9 64,102 + GFF3248 0.20 -0.3 64,102 + GFF3248 0.20 -1.7 64,103 - GFF3248 0.20 -0.5 64,103 - GFF3248 0.20 +0.6 64,103 - GFF3248 0.20 -1.8 64,103 - GFF3248 0.20 -0.6 64,103 - GFF3248 0.20 -0.3 64,103 - GFF3248 0.20 -0.3 64,103 - GFF3248 0.20 -0.5 64,345 + GFF3248 0.31 +0.8 64,345 + GFF3248 0.31 -1.6 64,345 + GFF3248 0.31 +1.0 64,345 + GFF3248 0.31 +0.4 64,345 + GFF3248 0.31 +0.6 64,346 - GFF3248 0.31 -0.7 64,346 - GFF3248 0.31 -0.2 64,346 - GFF3248 0.31 +0.1 64,346 - GFF3248 0.31 +0.6
Or see this region's nucleotide sequence