Strain Fitness in Variovorax sp. SCN45 around GFF3211

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3210 and GFF3211 are separated by 31 nucleotidesGFF3211 and GFF3212 are separated by 532 nucleotides GFF3210 - hypothetical protein, at 30,422 to 31,573 GFF3210 GFF3211 - no description, at 31,605 to 32,444 GFF3211 GFF3212 - Oxidoreductase, at 32,977 to 34,044 GFF3212 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 30.791 kb on + strand, within GFF3210at 30.791 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 31.094 kb on + strand, within GFF3210at 31.260 kb on - strand, within GFF3210at 31.260 kb on - strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.307 kb on - strand, within GFF3210at 31.404 kb on + strand, within GFF3210at 31.405 kb on - strand, within GFF3210at 31.405 kb on - strand, within GFF3210at 31.405 kb on - strand, within GFF3210at 31.466 kb on + strandat 31.466 kb on + strandat 31.466 kb on + strandat 31.467 kb on - strandat 31.467 kb on - strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.571 kb on + strandat 31.572 kb on - strandat 31.572 kb on - strandat 31.572 kb on - strandat 31.572 kb on - strandat 31.656 kb on + strandat 31.790 kb on + strand, within GFF3211at 31.790 kb on + strand, within GFF3211at 31.790 kb on + strand, within GFF3211at 31.866 kb on + strand, within GFF3211at 31.866 kb on + strand, within GFF3211at 31.867 kb on - strand, within GFF3211at 31.876 kb on - strand, within GFF3211at 31.933 kb on + strand, within GFF3211at 31.933 kb on + strand, within GFF3211at 32.031 kb on + strand, within GFF3211at 32.031 kb on + strand, within GFF3211at 32.031 kb on + strand, within GFF3211at 32.032 kb on - strand, within GFF3211at 32.035 kb on - strand, within GFF3211at 32.073 kb on + strand, within GFF3211at 32.074 kb on - strand, within GFF3211at 32.083 kb on + strand, within GFF3211at 32.084 kb on - strand, within GFF3211at 32.084 kb on - strand, within GFF3211at 32.117 kb on - strand, within GFF3211at 32.135 kb on + strand, within GFF3211at 32.197 kb on - strand, within GFF3211at 32.421 kb on + strandat 32.421 kb on + strandat 32.421 kb on + strandat 32.436 kb on + strandat 32.436 kb on + strandat 32.437 kb on - strandat 32.437 kb on - strandat 32.452 kb on + strandat 32.508 kb on + strandat 32.508 kb on + strandat 32.508 kb on + strandat 32.566 kb on + strandat 32.566 kb on + strandat 32.601 kb on + strandat 32.711 kb on + strandat 32.767 kb on - strandat 32.803 kb on + strandat 32.892 kb on + strandat 32.892 kb on + strandat 32.893 kb on - strandat 32.916 kb on + strandat 32.916 kb on + strandat 32.992 kb on + strandat 32.992 kb on + strandat 32.992 kb on + strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 32.993 kb on - strandat 33.113 kb on - strand, within GFF3212at 33.154 kb on + strand, within GFF3212at 33.155 kb on - strand, within GFF3212at 33.155 kb on - strand, within GFF3212at 33.156 kb on + strand, within GFF3212at 33.156 kb on + strand, within GFF3212at 33.157 kb on - strand, within GFF3212at 33.232 kb on + strand, within GFF3212at 33.334 kb on + strand, within GFF3212at 33.334 kb on + strand, within GFF3212at 33.335 kb on - strand, within GFF3212at 33.335 kb on - strand, within GFF3212at 33.335 kb on - strand, within GFF3212at 33.350 kb on - strand, within GFF3212at 33.350 kb on - strand, within GFF3212at 33.433 kb on + strand, within GFF3212at 33.434 kb on - strand, within GFF3212

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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30,791 + GFF3210 0.32 +1.6
30,791 + GFF3210 0.32 +1.6
30,904 + GFF3210 0.42 +0.8
30,904 + GFF3210 0.42 +0.1
30,904 + GFF3210 0.42 +0.3
30,904 + GFF3210 0.42 -0.0
30,905 - GFF3210 0.42 -0.2
30,905 - GFF3210 0.42 +0.2
30,905 - GFF3210 0.42 +0.1
30,905 - GFF3210 0.42 -1.9
30,905 - GFF3210 0.42 +1.8
30,905 - GFF3210 0.42 +0.4
30,908 + GFF3210 0.42 -0.8
30,908 + GFF3210 0.42 -1.4
30,908 + GFF3210 0.42 -0.6
30,908 + GFF3210 0.42 -0.9
30,909 - GFF3210 0.42 -0.3
30,909 - GFF3210 0.42 +1.2
30,909 - GFF3210 0.42 -0.4
30,909 - GFF3210 0.42 -0.8
30,909 - GFF3210 0.42 -1.5
30,970 + GFF3210 0.48 -0.0
30,970 + GFF3210 0.48 -0.3
30,970 + GFF3210 0.48 +0.1
30,970 + GFF3210 0.48 +0.6
30,970 + GFF3210 0.48 -0.9
30,971 - GFF3210 0.48 +1.6
30,971 - GFF3210 0.48 +0.8
30,971 - GFF3210 0.48 -0.8
31,094 + GFF3210 0.58 +0.1
31,260 - GFF3210 0.73 -0.5
31,260 - GFF3210 0.73 -0.0
31,283 + GFF3210 0.75 +0.4
31,283 + GFF3210 0.75 -0.1
31,283 + GFF3210 0.75 -0.4
31,283 + GFF3210 0.75 +0.4
31,284 - GFF3210 0.75 +0.5
31,284 - GFF3210 0.75 -0.4
31,284 - GFF3210 0.75 -0.2
31,284 - GFF3210 0.75 -1.4
31,286 + GFF3210 0.75 -0.1
31,286 + GFF3210 0.75 -1.0
31,286 + GFF3210 0.75 +0.1
31,286 + GFF3210 0.75 +1.1
31,286 + GFF3210 0.75 -0.2
31,286 + GFF3210 0.75 -1.4
31,286 + GFF3210 0.75 -0.1
31,286 + GFF3210 0.75 -1.0
31,286 + GFF3210 0.75 -1.3
31,286 + GFF3210 0.75 +0.2
31,286 + GFF3210 0.75 -0.8
31,286 + GFF3210 0.75 -0.4
31,287 - GFF3210 0.75 -0.7
31,287 - GFF3210 0.75 +0.5
31,287 - GFF3210 0.75 +0.5
31,287 - GFF3210 0.75 -2.1
31,307 - GFF3210 0.77 -0.8
31,404 + GFF3210 0.85 +0.4
31,405 - GFF3210 0.85 +0.8
31,405 - GFF3210 0.85 -0.8
31,405 - GFF3210 0.85 -0.1
31,466 + +0.6
31,466 + -0.0
31,466 + -0.6
31,467 - -0.9
31,467 - -0.0
31,571 + +0.4
31,571 + +0.1
31,571 + -0.1
31,571 + -1.0
31,571 + -0.4
31,571 + -0.1
31,572 - -0.9
31,572 - -1.5
31,572 - -0.9
31,572 - +0.8
31,656 + +0.4
31,790 + GFF3211 0.22 -1.0
31,790 + GFF3211 0.22 -0.5
31,790 + GFF3211 0.22 -0.4
31,866 + GFF3211 0.31 +0.1
31,866 + GFF3211 0.31 -0.6
31,867 - GFF3211 0.31 +0.0
31,876 - GFF3211 0.32 +0.2
31,933 + GFF3211 0.39 +0.5
31,933 + GFF3211 0.39 +1.9
32,031 + GFF3211 0.51 +0.8
32,031 + GFF3211 0.51 +1.7
32,031 + GFF3211 0.51 +0.0
32,032 - GFF3211 0.51 -1.0
32,035 - GFF3211 0.51 -0.4
32,073 + GFF3211 0.56 +0.7
32,074 - GFF3211 0.56 -0.3
32,083 + GFF3211 0.57 +1.0
32,084 - GFF3211 0.57 +1.3
32,084 - GFF3211 0.57 +0.1
32,117 - GFF3211 0.61 -0.1
32,135 + GFF3211 0.63 +0.9
32,197 - GFF3211 0.70 +0.1
32,421 + -0.3
32,421 + -0.1
32,421 + +1.2
32,436 + -0.6
32,436 + +0.1
32,437 - +0.5
32,437 - +1.4
32,452 + -0.3
32,508 + +0.6
32,508 + +0.3
32,508 + +0.1
32,566 + +0.5
32,566 + +4.2
32,601 + +0.1
32,711 + +0.4
32,767 - -0.7
32,803 + +0.0
32,892 + +1.6
32,892 + +0.1
32,893 - +0.6
32,916 + -0.8
32,916 + -0.1
32,992 + -1.8
32,992 + -1.1
32,992 + +0.3
32,993 - -0.9
32,993 - +2.2
32,993 - +0.1
32,993 - +1.4
32,993 - +0.4
32,993 - -0.0
32,993 - -0.9
32,993 - -0.4
32,993 - -0.2
32,993 - +0.0
33,113 - GFF3212 0.13 -0.1
33,154 + GFF3212 0.17 -0.6
33,155 - GFF3212 0.17 -0.6
33,155 - GFF3212 0.17 +1.0
33,156 + GFF3212 0.17 -0.4
33,156 + GFF3212 0.17 -0.4
33,157 - GFF3212 0.17 -0.5
33,232 + GFF3212 0.24 -0.4
33,334 + GFF3212 0.33 +1.9
33,334 + GFF3212 0.33 +0.1
33,335 - GFF3212 0.34 +0.9
33,335 - GFF3212 0.34 -0.8
33,335 - GFF3212 0.34 -0.6
33,350 - GFF3212 0.35 -0.0
33,350 - GFF3212 0.35 -0.1
33,433 + GFF3212 0.43 -0.6
33,434 - GFF3212 0.43 +0.1

Or see this region's nucleotide sequence