Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3101 and GFF3102 are separated by 9 nucleotides GFF3102 and GFF3103 are separated by 44 nucleotides GFF3103 and GFF3104 are separated by 39 nucleotides GFF3104 and GFF3105 are separated by 12 nucleotides
GFF3101 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 529,903 to 530,256
GFF3101
GFF3102 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY (EC 2.3.1.n3), at 530,266 to 530,904
GFF3102
GFF3103 - Cys-tRNA(Pro) deacylase YbaK, at 530,949 to 531,443
GFF3103
GFF3104 - no description, at 531,483 to 532,172
GFF3104
GFF3105 - Tas protein, an NADP(H)-dependent aldo-keto reductase, at 532,185 to 533,363
GFF3105
Position (kb) 530
531
532 Strain fitness (log2 ratio) -2
-1
0
1
2 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.056 kb on + strand, within GFF3101 at 530.057 kb on - strand, within GFF3101 at 530.057 kb on - strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.186 kb on + strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.187 kb on - strand, within GFF3101 at 530.950 kb on + strand at 530.951 kb on - strand at 530.951 kb on - strand at 531.026 kb on - strand, within GFF3103 at 531.026 kb on - strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.085 kb on + strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.086 kb on - strand, within GFF3103 at 531.136 kb on + strand, within GFF3103 at 531.136 kb on + strand, within GFF3103 at 531.136 kb on + strand, within GFF3103 at 531.137 kb on - strand, within GFF3103 at 531.352 kb on + strand, within GFF3103 at 531.352 kb on + strand, within GFF3103 at 531.352 kb on + strand, within GFF3103 at 531.352 kb on + strand, within GFF3103 at 531.352 kb on + strand, within GFF3103 at 531.352 kb on + strand, within GFF3103 at 531.353 kb on - strand, within GFF3103 at 531.353 kb on - strand, within GFF3103 at 531.353 kb on - strand, within GFF3103 at 531.353 kb on - strand, within GFF3103 at 531.353 kb on - strand, within GFF3103 at 531.358 kb on + strand, within GFF3103 at 531.358 kb on + strand, within GFF3103 at 531.358 kb on + strand, within GFF3103 at 531.359 kb on - strand, within GFF3103 at 531.359 kb on - strand, within GFF3103 at 531.359 kb on - strand, within GFF3103 at 531.422 kb on + strand at 531.422 kb on + strand at 531.422 kb on + strand at 531.422 kb on + strand at 531.422 kb on + strand at 531.422 kb on + strand at 531.423 kb on - strand at 531.423 kb on - strand at 531.423 kb on - strand at 531.423 kb on - strand at 531.423 kb on - strand at 531.423 kb on - strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.513 kb on + strand at 531.514 kb on - strand at 531.514 kb on - strand at 531.514 kb on - strand at 531.514 kb on - strand at 531.514 kb on - strand at 531.514 kb on - strand at 531.514 kb on - strand at 531.514 kb on - strand at 531.543 kb on + strand at 531.543 kb on + strand at 531.543 kb on + strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 532.261 kb on + strand at 532.262 kb on - strand at 532.336 kb on + strand, within GFF3105 at 532.336 kb on + strand, within GFF3105 at 532.337 kb on - strand, within GFF3105 at 532.337 kb on - strand, within GFF3105 at 532.337 kb on - strand, within GFF3105 at 532.396 kb on + strand, within GFF3105 at 532.396 kb on + strand, within GFF3105 at 532.396 kb on + strand, within GFF3105 at 532.396 kb on + strand, within GFF3105 at 532.397 kb on - strand, within GFF3105 at 532.397 kb on - strand, within GFF3105
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 530,056 + GFF3101 0.43 -0.6 530,056 + GFF3101 0.43 +0.9 530,056 + GFF3101 0.43 +0.9 530,056 + GFF3101 0.43 +0.1 530,056 + GFF3101 0.43 -1.8 530,056 + GFF3101 0.43 +0.0 530,057 - GFF3101 0.44 -1.2 530,057 - GFF3101 0.44 -0.1 530,186 + GFF3101 0.80 +1.1 530,186 + GFF3101 0.80 -0.1 530,186 + GFF3101 0.80 -0.7 530,186 + GFF3101 0.80 +0.1 530,187 - GFF3101 0.80 -1.2 530,187 - GFF3101 0.80 +0.1 530,187 - GFF3101 0.80 -0.1 530,187 - GFF3101 0.80 -1.7 530,187 - GFF3101 0.80 +0.0 530,187 - GFF3101 0.80 -1.0 530,187 - GFF3101 0.80 -0.2 530,187 - GFF3101 0.80 -1.8 530,187 - GFF3101 0.80 -1.7 530,187 - GFF3101 0.80 +1.9 530,187 - GFF3101 0.80 +0.1 530,187 - GFF3101 0.80 -1.5 530,950 + -1.6 530,951 - -0.9 530,951 - +0.1 531,026 - GFF3103 0.16 +2.7 531,026 - GFF3103 0.16 -0.6 531,085 + GFF3103 0.27 -1.0 531,085 + GFF3103 0.27 -0.2 531,085 + GFF3103 0.27 +0.7 531,085 + GFF3103 0.27 +0.3 531,085 + GFF3103 0.27 +0.3 531,085 + GFF3103 0.27 +0.4 531,085 + GFF3103 0.27 -0.2 531,085 + GFF3103 0.27 -2.2 531,085 + GFF3103 0.27 -0.2 531,085 + GFF3103 0.27 -0.2 531,085 + GFF3103 0.27 +0.7 531,086 - GFF3103 0.28 +0.3 531,086 - GFF3103 0.28 +0.3 531,086 - GFF3103 0.28 -2.7 531,086 - GFF3103 0.28 -0.8 531,086 - GFF3103 0.28 +0.1 531,086 - GFF3103 0.28 -1.7 531,086 - GFF3103 0.28 -0.6 531,086 - GFF3103 0.28 -0.2 531,086 - GFF3103 0.28 -1.1 531,086 - GFF3103 0.28 -1.7 531,086 - GFF3103 0.28 +0.7 531,086 - GFF3103 0.28 +0.3 531,136 + GFF3103 0.38 -2.7 531,136 + GFF3103 0.38 +1.9 531,136 + GFF3103 0.38 -1.1 531,137 - GFF3103 0.38 +0.7 531,352 + GFF3103 0.81 -0.5 531,352 + GFF3103 0.81 -0.2 531,352 + GFF3103 0.81 -0.7 531,352 + GFF3103 0.81 -1.2 531,352 + GFF3103 0.81 -0.5 531,352 + GFF3103 0.81 +1.9 531,353 - GFF3103 0.82 +0.2 531,353 - GFF3103 0.82 -1.3 531,353 - GFF3103 0.82 -0.5 531,353 - GFF3103 0.82 -0.2 531,353 - GFF3103 0.82 +0.9 531,358 + GFF3103 0.83 +0.1 531,358 + GFF3103 0.83 -1.0 531,358 + GFF3103 0.83 +0.2 531,359 - GFF3103 0.83 -0.9 531,359 - GFF3103 0.83 +0.4 531,359 - GFF3103 0.83 -0.1 531,422 + -0.3 531,422 + -1.5 531,422 + +0.3 531,422 + -0.9 531,422 + -1.4 531,422 + -1.4 531,423 - +0.0 531,423 - -0.9 531,423 - +0.9 531,423 - -0.4 531,423 - -0.2 531,423 - -0.4 531,513 + +0.3 531,513 + +0.1 531,513 + +1.5 531,513 + -0.2 531,513 + -1.1 531,513 + +0.2 531,513 + +0.1 531,513 + +1.1 531,513 + +0.3 531,514 - +0.4 531,514 - +1.6 531,514 - +0.0 531,514 - +1.9 531,514 - -0.6 531,514 - +0.6 531,514 - +0.2 531,514 - -0.7 531,543 + -0.2 531,543 + +0.2 531,543 + -0.6 531,544 - +0.0 531,544 - +1.3 531,544 - -0.5 531,544 - +0.2 531,544 - -0.2 531,544 - -0.4 531,544 - -0.8 532,261 + +0.6 532,262 - -0.8 532,336 + GFF3105 0.13 +0.1 532,336 + GFF3105 0.13 +0.6 532,337 - GFF3105 0.13 -2.0 532,337 - GFF3105 0.13 -0.1 532,337 - GFF3105 0.13 -0.6 532,396 + GFF3105 0.18 -1.3 532,396 + GFF3105 0.18 -1.4 532,396 + GFF3105 0.18 -0.1 532,396 + GFF3105 0.18 +0.4 532,397 - GFF3105 0.18 -2.4 532,397 - GFF3105 0.18 +0.5
Or see this region's nucleotide sequence