Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF307 and GFF308 are separated by 520 nucleotides GFF308 and GFF309 overlap by 4 nucleotides GFF309 and GFF310 overlap by 4 nucleotides
GFF307 - FIG143263: Glycosyl transferase, at 340,034 to 340,810
GFF307
GFF308 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 341,331 to 342,062
GFF308
GFF309 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.59), at 342,059 to 342,532
GFF309
GFF310 - FIG025233: SAM-dependent methyltransferases, at 342,529 to 343,305
GFF310
Position (kb) 341
342
343 Strain fitness (log2 ratio) -2
-1
0
1 at 340.470 kb on + strand, within GFF307 at 340.470 kb on + strand, within GFF307 at 340.470 kb on + strand, within GFF307 at 340.470 kb on + strand, within GFF307 at 340.471 kb on - strand, within GFF307 at 340.471 kb on - strand, within GFF307 at 340.471 kb on - strand, within GFF307 at 340.505 kb on + strand, within GFF307 at 340.506 kb on - strand, within GFF307 at 340.652 kb on + strand, within GFF307 at 340.652 kb on + strand, within GFF307 at 340.652 kb on + strand, within GFF307 at 340.652 kb on + strand, within GFF307 at 340.653 kb on - strand, within GFF307 at 340.653 kb on - strand, within GFF307 at 340.840 kb on - strand at 340.846 kb on + strand at 341.374 kb on + strand at 341.374 kb on + strand at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.602 kb on + strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 341.603 kb on - strand, within GFF308 at 342.163 kb on - strand, within GFF309 at 342.163 kb on - strand, within GFF309 at 342.342 kb on + strand, within GFF309 at 342.342 kb on + strand, within GFF309 at 342.343 kb on - strand, within GFF309 at 342.851 kb on + strand, within GFF310 at 342.851 kb on + strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 342.852 kb on - strand, within GFF310 at 343.001 kb on + strand, within GFF310
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 340,470 + GFF307 0.56 -0.5 340,470 + GFF307 0.56 +0.5 340,470 + GFF307 0.56 +1.0 340,470 + GFF307 0.56 -1.6 340,471 - GFF307 0.56 -1.3 340,471 - GFF307 0.56 -2.3 340,471 - GFF307 0.56 +0.3 340,505 + GFF307 0.61 +0.1 340,506 - GFF307 0.61 +0.1 340,652 + GFF307 0.80 -0.5 340,652 + GFF307 0.80 +0.0 340,652 + GFF307 0.80 +0.4 340,652 + GFF307 0.80 +1.5 340,653 - GFF307 0.80 -1.1 340,653 - GFF307 0.80 +0.4 340,840 - -0.5 340,846 + -0.1 341,374 + -0.6 341,374 + +0.9 341,602 + GFF308 0.37 -0.5 341,602 + GFF308 0.37 -0.6 341,602 + GFF308 0.37 -0.9 341,602 + GFF308 0.37 +0.3 341,602 + GFF308 0.37 +0.3 341,602 + GFF308 0.37 +0.2 341,602 + GFF308 0.37 -1.6 341,602 + GFF308 0.37 -1.2 341,602 + GFF308 0.37 +0.5 341,603 - GFF308 0.37 -0.5 341,603 - GFF308 0.37 -0.4 341,603 - GFF308 0.37 +1.7 341,603 - GFF308 0.37 -1.7 341,603 - GFF308 0.37 +0.3 341,603 - GFF308 0.37 +0.4 341,603 - GFF308 0.37 -0.1 342,163 - GFF309 0.22 -0.5 342,163 - GFF309 0.22 +0.5 342,342 + GFF309 0.60 +0.3 342,342 + GFF309 0.60 +0.4 342,343 - GFF309 0.60 -0.4 342,851 + GFF310 0.41 +0.5 342,851 + GFF310 0.41 -0.6 342,852 - GFF310 0.42 -1.4 342,852 - GFF310 0.42 -1.2 342,852 - GFF310 0.42 -0.0 343,001 + GFF310 0.61 +1.1
Or see this region's nucleotide sequence