Strain Fitness in Variovorax sp. SCN45 around GFF3074

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3073 and GFF3074 are separated by 9 nucleotidesGFF3074 and GFF3075 are separated by 16 nucleotides GFF3073 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 506,004 to 506,978 GFF3073 GFF3074 - Putative polysaccharide deacetylase, at 506,988 to 507,773 GFF3074 GFF3075 - Surface antigen, at 507,790 to 508,740 GFF3075 Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1 2at 506.065 kb on + strandat 506.539 kb on + strand, within GFF3073at 506.566 kb on + strand, within GFF3073at 506.566 kb on + strand, within GFF3073at 506.567 kb on - strand, within GFF3073at 506.734 kb on + strand, within GFF3073at 506.734 kb on + strand, within GFF3073at 506.735 kb on - strand, within GFF3073at 507.016 kb on + strandat 507.016 kb on + strandat 507.251 kb on - strand, within GFF3074at 507.251 kb on - strand, within GFF3074at 507.251 kb on - strand, within GFF3074at 507.251 kb on - strand, within GFF3074at 507.251 kb on - strand, within GFF3074at 507.251 kb on - strand, within GFF3074at 507.251 kb on - strand, within GFF3074at 507.251 kb on - strand, within GFF3074at 507.257 kb on - strand, within GFF3074at 507.316 kb on + strand, within GFF3074at 507.385 kb on + strand, within GFF3074at 507.487 kb on + strand, within GFF3074at 507.488 kb on - strand, within GFF3074at 507.499 kb on + strand, within GFF3074at 507.499 kb on + strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.500 kb on - strand, within GFF3074at 507.590 kb on + strand, within GFF3074at 507.590 kb on + strand, within GFF3074at 507.691 kb on + strand, within GFF3074at 507.691 kb on + strand, within GFF3074at 507.691 kb on + strand, within GFF3074at 507.692 kb on - strand, within GFF3074at 507.692 kb on - strand, within GFF3074at 507.692 kb on - strand, within GFF3074at 507.692 kb on - strand, within GFF3074at 507.692 kb on - strand, within GFF3074at 507.692 kb on - strand, within GFF3074at 507.791 kb on + strandat 507.791 kb on + strandat 507.792 kb on - strandat 507.792 kb on - strandat 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.917 kb on + strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.918 kb on - strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.974 kb on + strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 507.975 kb on - strand, within GFF3075at 508.301 kb on + strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.302 kb on - strand, within GFF3075at 508.397 kb on + strand, within GFF3075at 508.397 kb on + strand, within GFF3075at 508.398 kb on - strand, within GFF3075at 508.469 kb on + strand, within GFF3075at 508.469 kb on + strand, within GFF3075at 508.487 kb on + strand, within GFF3075at 508.487 kb on + strand, within GFF3075at 508.488 kb on - strand, within GFF3075at 508.488 kb on - strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.586 kb on + strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075at 508.587 kb on - strand, within GFF3075

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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506,065 + -0.7
506,539 + GFF3073 0.55 +0.3
506,566 + GFF3073 0.58 +0.8
506,566 + GFF3073 0.58 -0.8
506,567 - GFF3073 0.58 +0.3
506,734 + GFF3073 0.75 -0.3
506,734 + GFF3073 0.75 -0.9
506,735 - GFF3073 0.75 -1.0
507,016 + +1.2
507,016 + -0.9
507,251 - GFF3074 0.33 +0.5
507,251 - GFF3074 0.33 -0.1
507,251 - GFF3074 0.33 -0.5
507,251 - GFF3074 0.33 -0.2
507,251 - GFF3074 0.33 -1.2
507,251 - GFF3074 0.33 +0.3
507,251 - GFF3074 0.33 -0.4
507,251 - GFF3074 0.33 -0.5
507,257 - GFF3074 0.34 -0.2
507,316 + GFF3074 0.42 -0.3
507,385 + GFF3074 0.51 -0.2
507,487 + GFF3074 0.63 +0.7
507,488 - GFF3074 0.64 +1.5
507,499 + GFF3074 0.65 -1.1
507,499 + GFF3074 0.65 -0.5
507,500 - GFF3074 0.65 +0.6
507,500 - GFF3074 0.65 +0.3
507,500 - GFF3074 0.65 +1.5
507,500 - GFF3074 0.65 +1.3
507,500 - GFF3074 0.65 +1.7
507,500 - GFF3074 0.65 +0.2
507,500 - GFF3074 0.65 +0.3
507,500 - GFF3074 0.65 -0.5
507,590 + GFF3074 0.77 +0.3
507,590 + GFF3074 0.77 +1.4
507,691 + GFF3074 0.89 -0.9
507,691 + GFF3074 0.89 +0.1
507,691 + GFF3074 0.89 +0.8
507,692 - GFF3074 0.90 -0.2
507,692 - GFF3074 0.90 +1.1
507,692 - GFF3074 0.90 -1.4
507,692 - GFF3074 0.90 -0.3
507,692 - GFF3074 0.90 -0.2
507,692 - GFF3074 0.90 -2.2
507,791 + -0.9
507,791 + -0.5
507,792 - -0.3
507,792 - -1.4
507,917 + GFF3075 0.13 -1.0
507,917 + GFF3075 0.13 +0.2
507,917 + GFF3075 0.13 -1.3
507,917 + GFF3075 0.13 -0.4
507,917 + GFF3075 0.13 +0.1
507,917 + GFF3075 0.13 +0.1
507,917 + GFF3075 0.13 -1.9
507,917 + GFF3075 0.13 +0.4
507,917 + GFF3075 0.13 -0.7
507,918 - GFF3075 0.13 +0.6
507,918 - GFF3075 0.13 -0.7
507,918 - GFF3075 0.13 +0.6
507,918 - GFF3075 0.13 -1.4
507,918 - GFF3075 0.13 -0.1
507,918 - GFF3075 0.13 -0.8
507,974 + GFF3075 0.19 +1.3
507,974 + GFF3075 0.19 -1.2
507,974 + GFF3075 0.19 -0.1
507,974 + GFF3075 0.19 +0.9
507,974 + GFF3075 0.19 +0.2
507,974 + GFF3075 0.19 +0.8
507,974 + GFF3075 0.19 +0.3
507,974 + GFF3075 0.19 -2.0
507,974 + GFF3075 0.19 +0.2
507,974 + GFF3075 0.19 -0.5
507,975 - GFF3075 0.19 -0.4
507,975 - GFF3075 0.19 +1.9
507,975 - GFF3075 0.19 -0.9
507,975 - GFF3075 0.19 -0.2
507,975 - GFF3075 0.19 -0.6
507,975 - GFF3075 0.19 +0.6
508,301 + GFF3075 0.54 -1.0
508,302 - GFF3075 0.54 -0.3
508,302 - GFF3075 0.54 -0.9
508,302 - GFF3075 0.54 -0.8
508,302 - GFF3075 0.54 +0.6
508,397 + GFF3075 0.64 +0.1
508,397 + GFF3075 0.64 +0.3
508,398 - GFF3075 0.64 -0.5
508,469 + GFF3075 0.71 +2.6
508,469 + GFF3075 0.71 -0.4
508,487 + GFF3075 0.73 +0.3
508,487 + GFF3075 0.73 -0.4
508,488 - GFF3075 0.73 -1.4
508,488 - GFF3075 0.73 -0.3
508,586 + GFF3075 0.84 -0.3
508,586 + GFF3075 0.84 +0.3
508,586 + GFF3075 0.84 -0.9
508,586 + GFF3075 0.84 -0.3
508,586 + GFF3075 0.84 -0.6
508,586 + GFF3075 0.84 +0.1
508,586 + GFF3075 0.84 +0.3
508,586 + GFF3075 0.84 -1.6
508,587 - GFF3075 0.84 +0.6
508,587 - GFF3075 0.84 +1.4
508,587 - GFF3075 0.84 -1.2
508,587 - GFF3075 0.84 -0.2
508,587 - GFF3075 0.84 -0.3
508,587 - GFF3075 0.84 -1.7
508,587 - GFF3075 0.84 -0.7
508,587 - GFF3075 0.84 -0.4
508,587 - GFF3075 0.84 -0.5
508,587 - GFF3075 0.84 -0.2
508,587 - GFF3075 0.84 -0.3
508,587 - GFF3075 0.84 -0.9

Or see this region's nucleotide sequence