Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3040 and GFF3041 are separated by 57 nucleotides GFF3041 and GFF3042 are separated by 265 nucleotides
GFF3040 - hypothetical protein, at 472,386 to 474,662
GFF3040
GFF3041 - Outer membrane porin protein 32 precursor, at 474,720 to 475,877
GFF3041
GFF3042 - hypothetical protein, at 476,143 to 476,913
GFF3042
Position (kb) 474
475
476 Strain fitness (log2 ratio) -1
0
1 at 474.459 kb on + strand at 474.460 kb on - strand at 474.664 kb on - strand at 474.910 kb on + strand, within GFF3041 at 475.406 kb on - strand, within GFF3041 at 475.406 kb on - strand, within GFF3041 at 475.406 kb on - strand, within GFF3041 at 475.929 kb on + strand at 475.930 kb on - strand at 475.930 kb on - strand at 475.964 kb on + strand at 476.140 kb on + strand at 476.140 kb on + strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.141 kb on - strand at 476.161 kb on - strand at 476.365 kb on + strand, within GFF3042 at 476.365 kb on + strand, within GFF3042 at 476.366 kb on - strand, within GFF3042 at 476.428 kb on + strand, within GFF3042 at 476.429 kb on - strand, within GFF3042 at 476.617 kb on + strand, within GFF3042 at 476.617 kb on + strand, within GFF3042 at 476.698 kb on + strand, within GFF3042 at 476.699 kb on - strand, within GFF3042 at 476.699 kb on - strand, within GFF3042 at 476.744 kb on - strand, within GFF3042
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 474,459 + +0.3 474,460 - +0.2 474,664 - -0.2 474,910 + GFF3041 0.16 -0.1 475,406 - GFF3041 0.59 -0.1 475,406 - GFF3041 0.59 +0.2 475,406 - GFF3041 0.59 +0.5 475,929 + +1.0 475,930 - +0.1 475,930 - +0.3 475,964 + +1.3 476,140 + -0.3 476,140 + -1.1 476,141 - -0.0 476,141 - +0.7 476,141 - -0.2 476,141 - +0.7 476,141 - +0.6 476,161 - -0.1 476,365 + GFF3042 0.29 +0.1 476,365 + GFF3042 0.29 +0.3 476,366 - GFF3042 0.29 -1.1 476,428 + GFF3042 0.37 -0.9 476,429 - GFF3042 0.37 -0.5 476,617 + GFF3042 0.61 -0.5 476,617 + GFF3042 0.61 +0.2 476,698 + GFF3042 0.72 +0.1 476,699 - GFF3042 0.72 -0.1 476,699 - GFF3042 0.72 -0.5 476,744 - GFF3042 0.78 +0.2
Or see this region's nucleotide sequence