Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2941 and GFF2942 are separated by 21 nucleotides GFF2942 and GFF2943 overlap by 4 nucleotides GFF2943 and GFF2944 are separated by 39 nucleotides GFF2944 and GFF2945 are separated by 23 nucleotides GFF2945 and GFF2946 overlap by 4 nucleotides
GFF2941 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 367,511 to 368,617
GFF2941
GFF2942 - Epoxide hydrolase (EC 3.3.2.9), at 368,639 to 369,559
GFF2942
GFF2943 - S-formylglutathione hydrolase (EC 3.1.2.12), at 369,556 to 370,434
GFF2943
GFF2944 - Acetyltransferase, at 370,474 to 370,977
GFF2944
GFF2945 - Possible glyoxylase family protein (Lactoylglutathione lyase) (EC 4.4.1.5), at 371,001 to 371,390
GFF2945
GFF2946 - Regulator of competence-specific genes, at 371,387 to 371,797
GFF2946
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 368.612 kb on + strand at 368.612 kb on + strand at 368.612 kb on + strand at 368.613 kb on - strand at 368.613 kb on - strand at 368.693 kb on + strand at 368.693 kb on + strand at 368.693 kb on + strand at 368.693 kb on + strand at 368.694 kb on - strand at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.765 kb on + strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.766 kb on - strand, within GFF2942 at 368.819 kb on + strand, within GFF2942 at 368.819 kb on + strand, within GFF2942 at 368.820 kb on - strand, within GFF2942 at 368.820 kb on - strand, within GFF2942 at 368.831 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.032 kb on + strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.033 kb on - strand, within GFF2942 at 369.098 kb on + strand, within GFF2942 at 369.099 kb on - strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.104 kb on + strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.105 kb on - strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.107 kb on + strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.108 kb on - strand, within GFF2942 at 369.275 kb on + strand, within GFF2942 at 369.275 kb on + strand, within GFF2942 at 369.275 kb on + strand, within GFF2942 at 369.275 kb on + strand, within GFF2942 at 369.667 kb on + strand, within GFF2943 at 369.668 kb on - strand, within GFF2943 at 369.712 kb on + strand, within GFF2943 at 369.712 kb on + strand, within GFF2943 at 369.712 kb on + strand, within GFF2943 at 369.713 kb on - strand, within GFF2943 at 369.889 kb on + strand, within GFF2943 at 369.889 kb on + strand, within GFF2943 at 369.889 kb on + strand, within GFF2943 at 369.889 kb on + strand, within GFF2943 at 369.889 kb on + strand, within GFF2943 at 369.889 kb on + strand, within GFF2943 at 369.890 kb on - strand, within GFF2943 at 369.890 kb on - strand, within GFF2943 at 369.890 kb on - strand, within GFF2943 at 369.890 kb on - strand, within GFF2943 at 370.144 kb on + strand, within GFF2943 at 370.145 kb on - strand, within GFF2943 at 370.357 kb on + strand at 370.357 kb on + strand at 370.358 kb on - strand at 370.369 kb on + strand at 370.369 kb on + strand at 370.369 kb on + strand at 370.369 kb on + strand at 370.370 kb on - strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.372 kb on + strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.373 kb on - strand at 370.470 kb on + strand at 370.471 kb on - strand at 370.729 kb on + strand, within GFF2944 at 370.729 kb on + strand, within GFF2944 at 370.729 kb on + strand, within GFF2944 at 370.729 kb on + strand, within GFF2944 at 370.730 kb on - strand, within GFF2944 at 370.730 kb on - strand, within GFF2944 at 370.730 kb on - strand, within GFF2944 at 370.867 kb on + strand, within GFF2944 at 370.868 kb on - strand, within GFF2944 at 370.868 kb on - strand, within GFF2944 at 370.868 kb on - strand, within GFF2944 at 370.868 kb on - strand, within GFF2944 at 370.868 kb on - strand, within GFF2944 at 370.936 kb on + strand at 370.936 kb on + strand at 370.937 kb on - strand at 371.058 kb on + strand, within GFF2945 at 371.058 kb on + strand, within GFF2945 at 371.058 kb on + strand, within GFF2945 at 371.058 kb on + strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.059 kb on - strand, within GFF2945 at 371.067 kb on + strand, within GFF2945 at 371.067 kb on + strand, within GFF2945 at 371.067 kb on + strand, within GFF2945 at 371.068 kb on - strand, within GFF2945 at 371.094 kb on + strand, within GFF2945 at 371.094 kb on + strand, within GFF2945 at 371.094 kb on + strand, within GFF2945 at 371.095 kb on - strand, within GFF2945 at 371.095 kb on - strand, within GFF2945 at 371.095 kb on - strand, within GFF2945 at 371.153 kb on + strand, within GFF2945 at 371.334 kb on + strand, within GFF2945 at 371.334 kb on + strand, within GFF2945 at 371.337 kb on + strand, within GFF2945 at 371.337 kb on + strand, within GFF2945 at 371.337 kb on + strand, within GFF2945 at 371.338 kb on - strand, within GFF2945 at 371.338 kb on - strand, within GFF2945 at 371.338 kb on - strand, within GFF2945
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 368,612 + +0.6 368,612 + +0.7 368,612 + +0.6 368,613 - -0.6 368,613 - +1.0 368,693 + +0.2 368,693 + -0.3 368,693 + -0.3 368,693 + -0.5 368,694 - +0.6 368,765 + GFF2942 0.14 -0.1 368,765 + GFF2942 0.14 +0.0 368,765 + GFF2942 0.14 +0.3 368,765 + GFF2942 0.14 +0.1 368,765 + GFF2942 0.14 -0.4 368,765 + GFF2942 0.14 +0.2 368,765 + GFF2942 0.14 -1.2 368,765 + GFF2942 0.14 -0.5 368,765 + GFF2942 0.14 +0.2 368,765 + GFF2942 0.14 +0.0 368,765 + GFF2942 0.14 +0.4 368,765 + GFF2942 0.14 +2.0 368,766 - GFF2942 0.14 +0.5 368,766 - GFF2942 0.14 -0.5 368,766 - GFF2942 0.14 +0.4 368,766 - GFF2942 0.14 +0.0 368,766 - GFF2942 0.14 -0.8 368,819 + GFF2942 0.20 +0.2 368,819 + GFF2942 0.20 +0.4 368,820 - GFF2942 0.20 -0.6 368,820 - GFF2942 0.20 -0.3 368,831 + GFF2942 0.21 +2.0 369,032 + GFF2942 0.43 +0.3 369,032 + GFF2942 0.43 +1.0 369,032 + GFF2942 0.43 +1.0 369,032 + GFF2942 0.43 +0.3 369,033 - GFF2942 0.43 -0.1 369,033 - GFF2942 0.43 -0.7 369,033 - GFF2942 0.43 -0.8 369,033 - GFF2942 0.43 +0.7 369,033 - GFF2942 0.43 -0.4 369,033 - GFF2942 0.43 +0.0 369,033 - GFF2942 0.43 -1.0 369,098 + GFF2942 0.50 -0.5 369,099 - GFF2942 0.50 +0.0 369,104 + GFF2942 0.50 +1.0 369,104 + GFF2942 0.50 +0.3 369,104 + GFF2942 0.50 -0.7 369,104 + GFF2942 0.50 -1.2 369,104 + GFF2942 0.50 -0.1 369,104 + GFF2942 0.50 -0.2 369,104 + GFF2942 0.50 -0.4 369,104 + GFF2942 0.50 -0.9 369,105 - GFF2942 0.51 -0.8 369,105 - GFF2942 0.51 +0.9 369,105 - GFF2942 0.51 -0.8 369,105 - GFF2942 0.51 +1.0 369,105 - GFF2942 0.51 +2.0 369,105 - GFF2942 0.51 +2.0 369,105 - GFF2942 0.51 -1.3 369,105 - GFF2942 0.51 -1.0 369,105 - GFF2942 0.51 -0.3 369,105 - GFF2942 0.51 +1.0 369,105 - GFF2942 0.51 +1.7 369,105 - GFF2942 0.51 -0.5 369,107 + GFF2942 0.51 -0.3 369,107 + GFF2942 0.51 +0.2 369,107 + GFF2942 0.51 +0.3 369,107 + GFF2942 0.51 +4.1 369,107 + GFF2942 0.51 +0.1 369,107 + GFF2942 0.51 +0.6 369,107 + GFF2942 0.51 -0.2 369,108 - GFF2942 0.51 +0.0 369,108 - GFF2942 0.51 +0.8 369,108 - GFF2942 0.51 +1.4 369,108 - GFF2942 0.51 +0.9 369,108 - GFF2942 0.51 -0.1 369,108 - GFF2942 0.51 -1.2 369,108 - GFF2942 0.51 -2.5 369,275 + GFF2942 0.69 +0.1 369,275 + GFF2942 0.69 -0.2 369,275 + GFF2942 0.69 -1.1 369,275 + GFF2942 0.69 -1.0 369,667 + GFF2943 0.13 +0.4 369,668 - GFF2943 0.13 -1.2 369,712 + GFF2943 0.18 -1.1 369,712 + GFF2943 0.18 -1.0 369,712 + GFF2943 0.18 +0.3 369,713 - GFF2943 0.18 -0.1 369,889 + GFF2943 0.38 +0.1 369,889 + GFF2943 0.38 -0.2 369,889 + GFF2943 0.38 +1.3 369,889 + GFF2943 0.38 -1.2 369,889 + GFF2943 0.38 -0.5 369,889 + GFF2943 0.38 +0.0 369,890 - GFF2943 0.38 -0.9 369,890 - GFF2943 0.38 +0.2 369,890 - GFF2943 0.38 +0.2 369,890 - GFF2943 0.38 -0.4 370,144 + GFF2943 0.67 -0.4 370,145 - GFF2943 0.67 +0.1 370,357 + -0.7 370,357 + +0.4 370,358 - -0.9 370,369 + +0.4 370,369 + +0.7 370,369 + +0.4 370,369 + +1.5 370,370 - +0.3 370,372 + +1.0 370,372 + -0.3 370,372 + -1.7 370,372 + +0.4 370,372 + -1.9 370,372 + -1.5 370,372 + -0.6 370,372 + +0.4 370,372 + -0.2 370,372 + +0.0 370,372 + -1.3 370,373 - -2.0 370,373 - +0.1 370,373 - -0.4 370,373 - +0.4 370,373 - -2.0 370,373 - -0.9 370,373 - -0.1 370,373 - +1.4 370,373 - +0.1 370,373 - +0.0 370,373 - -0.1 370,373 - -1.3 370,470 + -0.1 370,471 - +0.9 370,729 + GFF2944 0.51 +0.2 370,729 + GFF2944 0.51 -0.4 370,729 + GFF2944 0.51 -0.7 370,729 + GFF2944 0.51 -0.0 370,730 - GFF2944 0.51 -1.2 370,730 - GFF2944 0.51 -0.4 370,730 - GFF2944 0.51 -0.5 370,867 + GFF2944 0.78 -0.1 370,868 - GFF2944 0.78 -0.1 370,868 - GFF2944 0.78 +0.9 370,868 - GFF2944 0.78 -0.4 370,868 - GFF2944 0.78 -0.3 370,868 - GFF2944 0.78 -0.9 370,936 + +0.3 370,936 + -0.7 370,937 - +1.4 371,058 + GFF2945 0.15 +0.4 371,058 + GFF2945 0.15 +0.2 371,058 + GFF2945 0.15 -0.3 371,058 + GFF2945 0.15 -0.1 371,059 - GFF2945 0.15 +0.5 371,059 - GFF2945 0.15 -0.4 371,059 - GFF2945 0.15 -1.3 371,059 - GFF2945 0.15 +1.0 371,059 - GFF2945 0.15 -0.6 371,059 - GFF2945 0.15 +0.0 371,059 - GFF2945 0.15 +0.8 371,059 - GFF2945 0.15 -0.4 371,059 - GFF2945 0.15 -0.3 371,059 - GFF2945 0.15 -0.4 371,059 - GFF2945 0.15 +0.0 371,059 - GFF2945 0.15 -0.2 371,059 - GFF2945 0.15 +0.1 371,059 - GFF2945 0.15 -1.1 371,059 - GFF2945 0.15 -0.3 371,059 - GFF2945 0.15 -0.7 371,059 - GFF2945 0.15 +0.1 371,059 - GFF2945 0.15 -1.3 371,059 - GFF2945 0.15 -1.3 371,067 + GFF2945 0.17 -1.3 371,067 + GFF2945 0.17 +0.3 371,067 + GFF2945 0.17 -1.3 371,068 - GFF2945 0.17 -0.4 371,094 + GFF2945 0.24 -2.2 371,094 + GFF2945 0.24 -0.3 371,094 + GFF2945 0.24 -0.6 371,095 - GFF2945 0.24 -0.1 371,095 - GFF2945 0.24 +0.8 371,095 - GFF2945 0.24 +0.3 371,153 + GFF2945 0.39 -0.1 371,334 + GFF2945 0.85 +0.8 371,334 + GFF2945 0.85 -0.2 371,337 + GFF2945 0.86 -0.7 371,337 + GFF2945 0.86 +0.8 371,337 + GFF2945 0.86 +1.4 371,338 - GFF2945 0.86 -0.3 371,338 - GFF2945 0.86 -0.3 371,338 - GFF2945 0.86 +0.3
Or see this region's nucleotide sequence