Strain Fitness in Variovorax sp. SCN45 around GFF2941

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2939 and GFF2940 overlap by 4 nucleotidesGFF2940 and GFF2941 are separated by 39 nucleotidesGFF2941 and GFF2942 are separated by 21 nucleotidesGFF2942 and GFF2943 overlap by 4 nucleotides GFF2939 - hypothetical protein, at 365,985 to 366,830 GFF2939 GFF2940 - Glutathione S-transferase, unnamed subgroup (EC 2.5.1.18), at 366,827 to 367,471 GFF2940 GFF2941 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 367,511 to 368,617 GFF2941 GFF2942 - Epoxide hydrolase (EC 3.3.2.9), at 368,639 to 369,559 GFF2942 GFF2943 - S-formylglutathione hydrolase (EC 3.1.2.12), at 369,556 to 370,434 GFF2943 Position (kb) 367 368 369Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.522 kb on + strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.523 kb on - strand, within GFF2939at 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.842 kb on + strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.843 kb on - strandat 366.909 kb on - strand, within GFF2940at 366.909 kb on - strand, within GFF2940at 367.049 kb on + strand, within GFF2940at 367.049 kb on + strand, within GFF2940at 367.050 kb on - strand, within GFF2940at 367.050 kb on - strand, within GFF2940at 367.064 kb on + strand, within GFF2940at 367.064 kb on + strand, within GFF2940at 367.065 kb on - strand, within GFF2940at 367.339 kb on + strand, within GFF2940at 367.340 kb on + strand, within GFF2940at 367.340 kb on + strand, within GFF2940at 367.340 kb on + strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.341 kb on - strand, within GFF2940at 367.473 kb on + strandat 367.473 kb on + strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.474 kb on - strandat 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.640 kb on + strand, within GFF2941at 367.641 kb on - strand, within GFF2941at 367.641 kb on - strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.643 kb on + strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.644 kb on - strand, within GFF2941at 367.772 kb on + strand, within GFF2941at 367.772 kb on + strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.773 kb on - strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.913 kb on + strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.914 kb on - strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.940 kb on + strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 367.941 kb on - strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.006 kb on + strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.007 kb on - strand, within GFF2941at 368.282 kb on + strand, within GFF2941at 368.282 kb on + strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.283 kb on - strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.495 kb on + strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.496 kb on - strand, within GFF2941at 368.612 kb on + strandat 368.612 kb on + strandat 368.612 kb on + strandat 368.613 kb on - strandat 368.613 kb on - strandat 368.693 kb on + strandat 368.693 kb on + strandat 368.693 kb on + strandat 368.693 kb on + strandat 368.694 kb on - strandat 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.765 kb on + strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.766 kb on - strand, within GFF2942at 368.819 kb on + strand, within GFF2942at 368.819 kb on + strand, within GFF2942at 368.820 kb on - strand, within GFF2942at 368.820 kb on - strand, within GFF2942at 368.831 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.032 kb on + strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.033 kb on - strand, within GFF2942at 369.098 kb on + strand, within GFF2942at 369.099 kb on - strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.104 kb on + strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.105 kb on - strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.107 kb on + strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.108 kb on - strand, within GFF2942at 369.275 kb on + strand, within GFF2942at 369.275 kb on + strand, within GFF2942at 369.275 kb on + strand, within GFF2942at 369.275 kb on + strand, within GFF2942

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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366,522 + GFF2939 0.63 -0.8
366,522 + GFF2939 0.63 -0.5
366,522 + GFF2939 0.63 +0.4
366,522 + GFF2939 0.63 +0.0
366,523 - GFF2939 0.64 +1.1
366,523 - GFF2939 0.64 +0.0
366,523 - GFF2939 0.64 +1.0
366,523 - GFF2939 0.64 -0.7
366,523 - GFF2939 0.64 +0.9
366,842 + -0.5
366,842 + +0.1
366,842 + +0.0
366,842 + +0.7
366,842 + -0.2
366,843 - +1.0
366,843 - +0.4
366,843 - +0.1
366,843 - -1.3
366,843 - -0.5
366,843 - +0.2
366,843 - -0.2
366,843 - -1.6
366,843 - -1.5
366,843 - -1.1
366,909 - GFF2940 0.13 +1.6
366,909 - GFF2940 0.13 +0.0
367,049 + GFF2940 0.34 -0.9
367,049 + GFF2940 0.34 -0.6
367,050 - GFF2940 0.35 +0.3
367,050 - GFF2940 0.35 -0.6
367,064 + GFF2940 0.37 +0.1
367,064 + GFF2940 0.37 +0.2
367,065 - GFF2940 0.37 +0.0
367,339 + GFF2940 0.79 -0.9
367,340 + GFF2940 0.80 -0.7
367,340 + GFF2940 0.80 +0.0
367,340 + GFF2940 0.80 -0.9
367,341 - GFF2940 0.80 +1.2
367,341 - GFF2940 0.80 +0.1
367,341 - GFF2940 0.80 -0.2
367,341 - GFF2940 0.80 +0.3
367,341 - GFF2940 0.80 -0.1
367,341 - GFF2940 0.80 -0.6
367,473 + -1.9
367,473 + -0.1
367,474 - -0.0
367,474 - -0.6
367,474 - -1.0
367,474 - -0.1
367,474 - +1.3
367,640 + GFF2941 0.12 +0.0
367,640 + GFF2941 0.12 +0.1
367,640 + GFF2941 0.12 -0.5
367,640 + GFF2941 0.12 +0.7
367,640 + GFF2941 0.12 -0.1
367,640 + GFF2941 0.12 -0.0
367,640 + GFF2941 0.12 -1.2
367,641 - GFF2941 0.12 +1.7
367,641 - GFF2941 0.12 +0.5
367,643 + GFF2941 0.12 +0.1
367,643 + GFF2941 0.12 +0.2
367,643 + GFF2941 0.12 -0.1
367,643 + GFF2941 0.12 +0.3
367,643 + GFF2941 0.12 +1.5
367,643 + GFF2941 0.12 -0.5
367,643 + GFF2941 0.12 -0.5
367,643 + GFF2941 0.12 +0.2
367,643 + GFF2941 0.12 -1.1
367,643 + GFF2941 0.12 +0.7
367,643 + GFF2941 0.12 -0.4
367,643 + GFF2941 0.12 -0.5
367,644 - GFF2941 0.12 -0.7
367,644 - GFF2941 0.12 -0.7
367,644 - GFF2941 0.12 -0.5
367,644 - GFF2941 0.12 -0.5
367,644 - GFF2941 0.12 -0.1
367,644 - GFF2941 0.12 -1.7
367,644 - GFF2941 0.12 -0.5
367,644 - GFF2941 0.12 -0.7
367,644 - GFF2941 0.12 -0.0
367,644 - GFF2941 0.12 -0.4
367,772 + GFF2941 0.24 +0.7
367,772 + GFF2941 0.24 +0.0
367,773 - GFF2941 0.24 +0.5
367,773 - GFF2941 0.24 -1.5
367,773 - GFF2941 0.24 +0.3
367,773 - GFF2941 0.24 -1.2
367,773 - GFF2941 0.24 -0.2
367,913 + GFF2941 0.36 +0.4
367,913 + GFF2941 0.36 -0.7
367,913 + GFF2941 0.36 -0.3
367,913 + GFF2941 0.36 +0.3
367,913 + GFF2941 0.36 -0.6
367,913 + GFF2941 0.36 -0.7
367,913 + GFF2941 0.36 +0.2
367,913 + GFF2941 0.36 -0.3
367,913 + GFF2941 0.36 +0.1
367,913 + GFF2941 0.36 -0.8
367,914 - GFF2941 0.36 +1.0
367,914 - GFF2941 0.36 +0.0
367,914 - GFF2941 0.36 -1.5
367,914 - GFF2941 0.36 -0.0
367,914 - GFF2941 0.36 -0.4
367,914 - GFF2941 0.36 -1.5
367,914 - GFF2941 0.36 +0.0
367,914 - GFF2941 0.36 +0.4
367,914 - GFF2941 0.36 +2.0
367,914 - GFF2941 0.36 -0.2
367,914 - GFF2941 0.36 -0.2
367,914 - GFF2941 0.36 -0.3
367,914 - GFF2941 0.36 -0.8
367,914 - GFF2941 0.36 -0.4
367,914 - GFF2941 0.36 -0.4
367,940 + GFF2941 0.39 -0.2
367,940 + GFF2941 0.39 +0.3
367,940 + GFF2941 0.39 +0.3
367,940 + GFF2941 0.39 +0.1
367,940 + GFF2941 0.39 -0.7
367,941 - GFF2941 0.39 -1.0
367,941 - GFF2941 0.39 +0.4
367,941 - GFF2941 0.39 -0.8
367,941 - GFF2941 0.39 -0.5
367,941 - GFF2941 0.39 -0.2
367,941 - GFF2941 0.39 -0.0
367,941 - GFF2941 0.39 +1.0
368,006 + GFF2941 0.45 -1.1
368,006 + GFF2941 0.45 +0.3
368,006 + GFF2941 0.45 +0.3
368,006 + GFF2941 0.45 +1.0
368,006 + GFF2941 0.45 -0.6
368,006 + GFF2941 0.45 +1.3
368,007 - GFF2941 0.45 -0.4
368,007 - GFF2941 0.45 -1.4
368,007 - GFF2941 0.45 +1.1
368,007 - GFF2941 0.45 -1.6
368,007 - GFF2941 0.45 -0.7
368,007 - GFF2941 0.45 +0.8
368,007 - GFF2941 0.45 -0.5
368,282 + GFF2941 0.70 +0.4
368,282 + GFF2941 0.70 +0.0
368,283 - GFF2941 0.70 -0.5
368,283 - GFF2941 0.70 -0.8
368,283 - GFF2941 0.70 +0.2
368,495 + GFF2941 0.89 -1.2
368,495 + GFF2941 0.89 +0.1
368,495 + GFF2941 0.89 -1.8
368,495 + GFF2941 0.89 -0.8
368,496 - GFF2941 0.89 +0.4
368,496 - GFF2941 0.89 -0.6
368,496 - GFF2941 0.89 +0.5
368,496 - GFF2941 0.89 -0.4
368,496 - GFF2941 0.89 +0.1
368,496 - GFF2941 0.89 -0.5
368,496 - GFF2941 0.89 +0.8
368,496 - GFF2941 0.89 -1.5
368,496 - GFF2941 0.89 +0.5
368,496 - GFF2941 0.89 +0.2
368,612 + +0.6
368,612 + +0.7
368,612 + +0.6
368,613 - -0.6
368,613 - +1.0
368,693 + +0.2
368,693 + -0.3
368,693 + -0.3
368,693 + -0.5
368,694 - +0.6
368,765 + GFF2942 0.14 -0.1
368,765 + GFF2942 0.14 +0.0
368,765 + GFF2942 0.14 +0.3
368,765 + GFF2942 0.14 +0.1
368,765 + GFF2942 0.14 -0.4
368,765 + GFF2942 0.14 +0.2
368,765 + GFF2942 0.14 -1.2
368,765 + GFF2942 0.14 -0.5
368,765 + GFF2942 0.14 +0.2
368,765 + GFF2942 0.14 +0.0
368,765 + GFF2942 0.14 +0.4
368,765 + GFF2942 0.14 +2.0
368,766 - GFF2942 0.14 +0.5
368,766 - GFF2942 0.14 -0.5
368,766 - GFF2942 0.14 +0.4
368,766 - GFF2942 0.14 +0.0
368,766 - GFF2942 0.14 -0.8
368,819 + GFF2942 0.20 +0.2
368,819 + GFF2942 0.20 +0.4
368,820 - GFF2942 0.20 -0.6
368,820 - GFF2942 0.20 -0.3
368,831 + GFF2942 0.21 +2.0
369,032 + GFF2942 0.43 +0.3
369,032 + GFF2942 0.43 +1.0
369,032 + GFF2942 0.43 +1.0
369,032 + GFF2942 0.43 +0.3
369,033 - GFF2942 0.43 -0.1
369,033 - GFF2942 0.43 -0.7
369,033 - GFF2942 0.43 -0.8
369,033 - GFF2942 0.43 +0.7
369,033 - GFF2942 0.43 -0.4
369,033 - GFF2942 0.43 +0.0
369,033 - GFF2942 0.43 -1.0
369,098 + GFF2942 0.50 -0.5
369,099 - GFF2942 0.50 +0.0
369,104 + GFF2942 0.50 +1.0
369,104 + GFF2942 0.50 +0.3
369,104 + GFF2942 0.50 -0.7
369,104 + GFF2942 0.50 -1.2
369,104 + GFF2942 0.50 -0.1
369,104 + GFF2942 0.50 -0.2
369,104 + GFF2942 0.50 -0.4
369,104 + GFF2942 0.50 -0.9
369,105 - GFF2942 0.51 -0.8
369,105 - GFF2942 0.51 +0.9
369,105 - GFF2942 0.51 -0.8
369,105 - GFF2942 0.51 +1.0
369,105 - GFF2942 0.51 +2.0
369,105 - GFF2942 0.51 +2.0
369,105 - GFF2942 0.51 -1.3
369,105 - GFF2942 0.51 -1.0
369,105 - GFF2942 0.51 -0.3
369,105 - GFF2942 0.51 +1.0
369,105 - GFF2942 0.51 +1.7
369,105 - GFF2942 0.51 -0.5
369,107 + GFF2942 0.51 -0.3
369,107 + GFF2942 0.51 +0.2
369,107 + GFF2942 0.51 +0.3
369,107 + GFF2942 0.51 +4.1
369,107 + GFF2942 0.51 +0.1
369,107 + GFF2942 0.51 +0.6
369,107 + GFF2942 0.51 -0.2
369,108 - GFF2942 0.51 +0.0
369,108 - GFF2942 0.51 +0.8
369,108 - GFF2942 0.51 +1.4
369,108 - GFF2942 0.51 +0.9
369,108 - GFF2942 0.51 -0.1
369,108 - GFF2942 0.51 -1.2
369,108 - GFF2942 0.51 -2.5
369,275 + GFF2942 0.69 +0.1
369,275 + GFF2942 0.69 -0.2
369,275 + GFF2942 0.69 -1.1
369,275 + GFF2942 0.69 -1.0

Or see this region's nucleotide sequence