Strain Fitness in Variovorax sp. SCN45 around GFF2905

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2904 and GFF2905 are separated by 213 nucleotidesGFF2905 and GFF2906 are separated by 767 nucleotides GFF2904 - hypothetical protein, at 329,966 to 330,697 GFF2904 GFF2905 - surface antigen gene, at 330,911 to 332,317 GFF2905 GFF2906 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26), at 333,085 to 334,521 GFF2906 Position (kb) 330 331 332 333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 329.919 kb on + strandat 329.920 kb on - strandat 329.998 kb on - strandat 329.998 kb on - strandat 330.072 kb on - strand, within GFF2904at 330.119 kb on + strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.120 kb on - strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.158 kb on + strand, within GFF2904at 330.159 kb on - strand, within GFF2904at 330.159 kb on - strand, within GFF2904at 330.170 kb on + strand, within GFF2904at 330.171 kb on - strand, within GFF2904at 330.171 kb on - strand, within GFF2904at 330.392 kb on + strand, within GFF2904at 330.425 kb on + strand, within GFF2904at 330.555 kb on - strand, within GFF2904at 330.555 kb on - strand, within GFF2904at 330.695 kb on + strandat 330.794 kb on - strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.799 kb on + strandat 330.800 kb on - strandat 330.800 kb on - strandat 330.803 kb on + strandat 330.804 kb on - strandat 331.070 kb on + strand, within GFF2905at 331.070 kb on + strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.071 kb on - strand, within GFF2905at 331.203 kb on - strand, within GFF2905at 331.328 kb on + strand, within GFF2905at 331.328 kb on + strand, within GFF2905at 331.329 kb on - strand, within GFF2905at 331.329 kb on - strand, within GFF2905at 331.364 kb on + strand, within GFF2905at 331.472 kb on + strand, within GFF2905at 331.472 kb on + strand, within GFF2905at 331.473 kb on - strand, within GFF2905at 331.473 kb on - strand, within GFF2905at 331.473 kb on - strand, within GFF2905at 331.616 kb on + strand, within GFF2905at 331.617 kb on - strand, within GFF2905at 331.617 kb on - strand, within GFF2905at 331.617 kb on - strand, within GFF2905at 331.617 kb on - strand, within GFF2905at 331.757 kb on + strand, within GFF2905at 331.758 kb on - strand, within GFF2905at 331.758 kb on - strand, within GFF2905at 331.901 kb on + strand, within GFF2905at 331.901 kb on + strand, within GFF2905at 331.901 kb on + strand, within GFF2905at 331.902 kb on - strand, within GFF2905at 331.902 kb on - strand, within GFF2905at 331.902 kb on - strand, within GFF2905at 331.918 kb on + strand, within GFF2905at 331.918 kb on + strand, within GFF2905at 331.995 kb on + strand, within GFF2905at 331.996 kb on - strand, within GFF2905at 332.042 kb on + strand, within GFF2905at 332.042 kb on + strand, within GFF2905at 332.063 kb on + strand, within GFF2905at 332.183 kb on + strandat 332.184 kb on - strandat 332.583 kb on + strandat 332.584 kb on - strandat 332.584 kb on - strandat 332.585 kb on + strandat 332.585 kb on + strandat 332.586 kb on - strandat 332.586 kb on - strandat 332.586 kb on - strandat 332.657 kb on - strandat 332.703 kb on + strandat 332.703 kb on + strandat 332.703 kb on + strandat 332.703 kb on + strandat 332.703 kb on + strandat 332.751 kb on + strandat 332.751 kb on + strandat 332.751 kb on + strandat 332.817 kb on + strandat 332.818 kb on - strandat 332.880 kb on + strandat 332.880 kb on + strandat 332.880 kb on + strandat 332.881 kb on - strandat 332.881 kb on - strandat 332.881 kb on - strandat 332.960 kb on - strandat 333.003 kb on - strandat 333.003 kb on - strandat 333.003 kb on - strandat 333.098 kb on + strandat 333.099 kb on - strandat 333.114 kb on + strandat 333.114 kb on + strandat 333.115 kb on - strandat 333.135 kb on - strandat 333.158 kb on + strandat 333.158 kb on + strandat 333.159 kb on - strandat 333.159 kb on - strandat 333.194 kb on + strandat 333.194 kb on + strandat 333.195 kb on - strandat 333.195 kb on - strandat 333.195 kb on - strandat 333.266 kb on + strand, within GFF2906at 333.267 kb on - strand, within GFF2906at 333.267 kb on - strand, within GFF2906at 333.267 kb on - strand, within GFF2906at 333.267 kb on - strand, within GFF2906

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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329,919 + -0.1
329,920 - +0.6
329,998 - +0.3
329,998 - -0.3
330,072 - GFF2904 0.14 -0.3
330,119 + GFF2904 0.21 -0.3
330,120 - GFF2904 0.21 +1.8
330,120 - GFF2904 0.21 +0.1
330,120 - GFF2904 0.21 +0.4
330,120 - GFF2904 0.21 +0.5
330,158 + GFF2904 0.26 -0.8
330,158 + GFF2904 0.26 +0.2
330,158 + GFF2904 0.26 +0.2
330,158 + GFF2904 0.26 -0.3
330,158 + GFF2904 0.26 -0.4
330,158 + GFF2904 0.26 +1.1
330,158 + GFF2904 0.26 +0.7
330,159 - GFF2904 0.26 -0.5
330,159 - GFF2904 0.26 -0.3
330,170 + GFF2904 0.28 -0.2
330,171 - GFF2904 0.28 +1.2
330,171 - GFF2904 0.28 +0.2
330,392 + GFF2904 0.58 -0.7
330,425 + GFF2904 0.63 +1.1
330,555 - GFF2904 0.80 -1.0
330,555 - GFF2904 0.80 +0.4
330,695 + -0.0
330,794 - -1.1
330,799 + -0.3
330,799 + +0.1
330,799 + +0.6
330,799 + -0.4
330,800 - +1.1
330,800 - -0.8
330,803 + -0.3
330,804 - +0.7
331,070 + GFF2905 0.11 -0.7
331,070 + GFF2905 0.11 +0.4
331,071 - GFF2905 0.11 -0.5
331,071 - GFF2905 0.11 -0.5
331,071 - GFF2905 0.11 -1.3
331,071 - GFF2905 0.11 -0.1
331,071 - GFF2905 0.11 -1.0
331,203 - GFF2905 0.21 -0.8
331,328 + GFF2905 0.30 -0.2
331,328 + GFF2905 0.30 +0.3
331,329 - GFF2905 0.30 +0.2
331,329 - GFF2905 0.30 +0.2
331,364 + GFF2905 0.32 +1.0
331,472 + GFF2905 0.40 -0.4
331,472 + GFF2905 0.40 -2.0
331,473 - GFF2905 0.40 -0.5
331,473 - GFF2905 0.40 -0.8
331,473 - GFF2905 0.40 +0.1
331,616 + GFF2905 0.50 +2.0
331,617 - GFF2905 0.50 +3.0
331,617 - GFF2905 0.50 -0.3
331,617 - GFF2905 0.50 -0.7
331,617 - GFF2905 0.50 -2.0
331,757 + GFF2905 0.60 +0.5
331,758 - GFF2905 0.60 -0.2
331,758 - GFF2905 0.60 -0.3
331,901 + GFF2905 0.70 -0.7
331,901 + GFF2905 0.70 -1.8
331,901 + GFF2905 0.70 -0.5
331,902 - GFF2905 0.70 +0.5
331,902 - GFF2905 0.70 -2.0
331,902 - GFF2905 0.70 -0.0
331,918 + GFF2905 0.72 +0.0
331,918 + GFF2905 0.72 -0.3
331,995 + GFF2905 0.77 -0.1
331,996 - GFF2905 0.77 +0.2
332,042 + GFF2905 0.80 +0.4
332,042 + GFF2905 0.80 -0.2
332,063 + GFF2905 0.82 -1.3
332,183 + +1.3
332,184 - +0.6
332,583 + -0.6
332,584 - +0.2
332,584 - -1.8
332,585 + -0.1
332,585 + +0.7
332,586 - +1.6
332,586 - -0.2
332,586 - +0.3
332,657 - -0.2
332,703 + -0.2
332,703 + +0.3
332,703 + +0.0
332,703 + -0.7
332,703 + +0.9
332,751 + -1.0
332,751 + -1.5
332,751 + +0.5
332,817 + +0.9
332,818 - +1.3
332,880 + -1.2
332,880 + -0.1
332,880 + -1.3
332,881 - -0.4
332,881 - -0.0
332,881 - +0.5
332,960 - +0.8
333,003 - -0.1
333,003 - +0.9
333,003 - -1.3
333,098 + -0.9
333,099 - -1.0
333,114 + +0.5
333,114 + -0.0
333,115 - -0.3
333,135 - -1.1
333,158 + -0.7
333,158 + +1.2
333,159 - -0.5
333,159 - -0.9
333,194 + -1.0
333,194 + +0.8
333,195 - +1.3
333,195 - -0.0
333,195 - +0.4
333,266 + GFF2906 0.13 +0.2
333,267 - GFF2906 0.13 -1.1
333,267 - GFF2906 0.13 -0.5
333,267 - GFF2906 0.13 +0.5
333,267 - GFF2906 0.13 -0.1

Or see this region's nucleotide sequence