Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2808 and GFF2809 are separated by 13 nucleotides GFF2809 and GFF2810 overlap by 4 nucleotides GFF2810 and GFF2811 overlap by 1 nucleotides GFF2811 and GFF2812 are separated by 15 nucleotides
GFF2808 - hypothetical protein, at 237,593 to 238,042
GFF2808
GFF2809 - Putative transcription regulator, at 238,056 to 238,505
GFF2809
GFF2810 - hypothetical protein, at 238,502 to 238,975
GFF2810
GFF2811 - Transcriptional regulator, YafY family, at 238,975 to 239,685
GFF2811
GFF2812 - Replicative DNA helicase (DnaB) (EC 3.6.4.12), at 239,701 to 241,107
GFF2812
Position (kb) 238
239
240 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 238.032 kb on + strand at 238.032 kb on + strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.033 kb on - strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.053 kb on + strand at 238.054 kb on - strand at 238.054 kb on - strand at 238.054 kb on - strand at 238.054 kb on - strand at 238.192 kb on - strand, within GFF2809 at 238.192 kb on - strand, within GFF2809 at 238.192 kb on - strand, within GFF2809 at 238.192 kb on - strand, within GFF2809 at 238.239 kb on + strand, within GFF2809 at 238.239 kb on + strand, within GFF2809 at 238.248 kb on + strand, within GFF2809 at 238.249 kb on - strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.338 kb on + strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.339 kb on - strand, within GFF2809 at 238.407 kb on + strand, within GFF2809 at 238.408 kb on - strand, within GFF2809 at 238.408 kb on - strand, within GFF2809 at 238.440 kb on + strand, within GFF2809 at 238.441 kb on - strand, within GFF2809 at 238.461 kb on + strand at 238.461 kb on + strand at 238.461 kb on + strand at 238.461 kb on + strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.462 kb on - strand at 238.480 kb on + strand at 238.480 kb on + strand at 238.480 kb on + strand at 238.480 kb on + strand at 238.481 kb on - strand at 238.481 kb on - strand at 238.541 kb on + strand at 238.541 kb on + strand at 238.541 kb on + strand at 238.541 kb on + strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.542 kb on - strand at 238.789 kb on + strand, within GFF2810 at 238.789 kb on + strand, within GFF2810 at 238.790 kb on - strand, within GFF2810 at 238.857 kb on - strand, within GFF2810 at 238.931 kb on + strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 238.932 kb on - strand at 239.083 kb on + strand, within GFF2811 at 239.084 kb on - strand, within GFF2811 at 239.084 kb on - strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.341 kb on + strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.342 kb on - strand, within GFF2811 at 239.434 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.491 kb on + strand, within GFF2811 at 239.492 kb on - strand, within GFF2811 at 239.492 kb on - strand, within GFF2811 at 239.642 kb on - strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.683 kb on + strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.684 kb on - strand at 239.706 kb on - strand at 239.706 kb on - strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.723 kb on + strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand at 239.724 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 238,032 + -0.3 238,032 + +0.9 238,033 - -0.7 238,033 - -0.1 238,033 - -0.6 238,033 - +0.1 238,033 - +0.9 238,033 - -0.1 238,033 - -0.0 238,033 - +0.5 238,033 - -0.7 238,053 + -1.6 238,053 + +4.2 238,053 + +0.4 238,053 + -0.5 238,053 + +0.1 238,053 + +0.3 238,053 + +1.3 238,053 + -0.8 238,053 + -0.6 238,053 + -0.4 238,053 + +0.1 238,053 + +0.1 238,054 - +0.1 238,054 - -0.1 238,054 - -1.0 238,054 - -1.0 238,192 - GFF2809 0.30 +0.3 238,192 - GFF2809 0.30 -0.7 238,192 - GFF2809 0.30 -0.6 238,192 - GFF2809 0.30 -1.4 238,239 + GFF2809 0.41 +0.7 238,239 + GFF2809 0.41 +1.1 238,248 + GFF2809 0.43 -0.9 238,249 - GFF2809 0.43 -0.2 238,338 + GFF2809 0.63 +0.5 238,338 + GFF2809 0.63 -0.6 238,338 + GFF2809 0.63 -0.4 238,338 + GFF2809 0.63 +0.5 238,338 + GFF2809 0.63 -0.2 238,338 + GFF2809 0.63 -0.1 238,338 + GFF2809 0.63 +1.3 238,338 + GFF2809 0.63 -0.2 238,339 - GFF2809 0.63 -0.5 238,339 - GFF2809 0.63 -0.4 238,339 - GFF2809 0.63 -0.7 238,339 - GFF2809 0.63 +0.2 238,339 - GFF2809 0.63 +2.1 238,339 - GFF2809 0.63 -1.8 238,339 - GFF2809 0.63 -0.3 238,407 + GFF2809 0.78 -0.2 238,408 - GFF2809 0.78 +0.1 238,408 - GFF2809 0.78 -0.2 238,440 + GFF2809 0.85 -0.6 238,441 - GFF2809 0.86 -0.9 238,461 + -1.1 238,461 + -0.1 238,461 + +0.5 238,461 + -0.4 238,462 - -1.1 238,462 - +0.0 238,462 - -0.8 238,462 - -1.6 238,462 - -0.2 238,462 - +0.5 238,462 - -0.1 238,462 - -0.7 238,480 + -0.7 238,480 + -0.7 238,480 + +0.8 238,480 + -0.9 238,481 - -0.7 238,481 - -0.8 238,541 + +1.5 238,541 + -0.7 238,541 + -0.1 238,541 + -0.9 238,542 - -0.7 238,542 - -1.8 238,542 - +0.0 238,542 - -0.2 238,542 - -1.9 238,542 - -0.0 238,789 + GFF2810 0.61 -0.1 238,789 + GFF2810 0.61 +0.1 238,790 - GFF2810 0.61 -0.3 238,857 - GFF2810 0.75 +0.8 238,931 + -0.8 238,932 - -1.7 238,932 - +1.7 238,932 - -0.1 238,932 - -0.1 238,932 - +0.2 239,083 + GFF2811 0.15 +0.4 239,084 - GFF2811 0.15 +0.3 239,084 - GFF2811 0.15 -0.2 239,341 + GFF2811 0.51 +0.7 239,341 + GFF2811 0.51 -0.9 239,341 + GFF2811 0.51 -0.1 239,341 + GFF2811 0.51 -0.1 239,342 - GFF2811 0.52 -0.8 239,342 - GFF2811 0.52 -1.7 239,342 - GFF2811 0.52 -1.2 239,342 - GFF2811 0.52 -1.0 239,342 - GFF2811 0.52 -0.9 239,342 - GFF2811 0.52 -0.6 239,342 - GFF2811 0.52 +0.2 239,342 - GFF2811 0.52 -1.3 239,434 + GFF2811 0.65 -0.1 239,491 + GFF2811 0.73 -0.5 239,491 + GFF2811 0.73 -1.2 239,491 + GFF2811 0.73 -0.3 239,491 + GFF2811 0.73 +0.8 239,491 + GFF2811 0.73 -0.2 239,492 - GFF2811 0.73 -0.5 239,492 - GFF2811 0.73 -0.0 239,642 - -0.4 239,683 + +3.3 239,683 + -1.2 239,683 + +0.1 239,683 + -1.4 239,683 + -0.4 239,683 + -0.5 239,683 + +0.1 239,683 + +0.6 239,683 + -0.3 239,683 + -0.2 239,684 - -2.4 239,684 - -0.7 239,684 - -1.1 239,684 - -1.5 239,684 - +0.4 239,684 - -0.5 239,684 - +3.5 239,684 - -1.1 239,684 - +0.1 239,684 - -0.5 239,684 - -0.3 239,706 - +0.6 239,706 - +0.4 239,723 + -0.5 239,723 + -0.7 239,723 + -0.9 239,723 + -0.9 239,723 + +1.1 239,723 + -0.6 239,723 + -1.1 239,723 + -0.2 239,723 + +1.8 239,724 - -0.4 239,724 - -0.2 239,724 - -0.4 239,724 - +0.2 239,724 - -0.3 239,724 - +0.5
Or see this region's nucleotide sequence