Strain Fitness in Variovorax sp. SCN45 around GFF2732

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2731 and GFF2732 are separated by 14 nucleotidesGFF2732 and GFF2733 are separated by 19 nucleotidesGFF2733 and GFF2734 are separated by 30 nucleotides GFF2731 - hypothetical protein, at 166,443 to 167,564 GFF2731 GFF2732 - Soluble lytic murein transglycosylase (EC 4.2.2.n1), at 167,579 to 168,481 GFF2732 GFF2733 - no description, at 168,501 to 168,959 GFF2733 GFF2734 - DNA topoisomerase IV subunit B (EC 5.99.1.3), at 168,990 to 170,987 GFF2734 Position (kb) 167 168 169Strain fitness (log2 ratio) -2 -1 0 1 2 3at 166.606 kb on + strand, within GFF2731at 166.606 kb on + strand, within GFF2731at 166.606 kb on + strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.607 kb on - strand, within GFF2731at 166.612 kb on + strand, within GFF2731at 166.699 kb on + strand, within GFF2731at 166.699 kb on + strand, within GFF2731at 166.700 kb on - strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.746 kb on + strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.747 kb on - strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.774 kb on + strand, within GFF2731at 166.775 kb on - strand, within GFF2731at 166.775 kb on - strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.798 kb on + strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.799 kb on - strand, within GFF2731at 166.844 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.921 kb on + strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 166.922 kb on - strand, within GFF2731at 167.074 kb on + strand, within GFF2731at 167.074 kb on + strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.075 kb on - strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.080 kb on + strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.081 kb on - strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.131 kb on + strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.132 kb on - strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.221 kb on + strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.222 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.234 kb on - strand, within GFF2731at 167.447 kb on - strand, within GFF2731at 167.447 kb on - strand, within GFF2731at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.799 kb on + strand, within GFF2732at 167.800 kb on - strand, within GFF2732at 167.800 kb on - strand, within GFF2732at 167.800 kb on - strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.805 kb on + strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.806 kb on - strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.829 kb on + strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.830 kb on - strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.847 kb on + strand, within GFF2732at 167.848 kb on - strand, within GFF2732at 167.848 kb on - strand, within GFF2732at 167.898 kb on + strand, within GFF2732at 167.898 kb on + strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.899 kb on - strand, within GFF2732at 167.955 kb on + strand, within GFF2732at 167.955 kb on + strand, within GFF2732at 167.972 kb on + strand, within GFF2732at 167.972 kb on + strand, within GFF2732at 167.972 kb on + strand, within GFF2732at 167.973 kb on - strand, within GFF2732at 167.973 kb on - strand, within GFF2732at 167.973 kb on - strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.147 kb on + strand, within GFF2732at 168.148 kb on - strand, within GFF2732at 168.201 kb on + strand, within GFF2732at 168.201 kb on + strand, within GFF2732at 168.202 kb on - strand, within GFF2732at 168.202 kb on - strand, within GFF2732at 168.343 kb on - strand, within GFF2732at 168.396 kb on + strandat 168.396 kb on + strandat 168.396 kb on + strandat 168.397 kb on - strandat 168.397 kb on - strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.402 kb on + strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.403 kb on - strandat 168.474 kb on + strandat 168.474 kb on + strandat 168.475 kb on - strandat 168.475 kb on - strandat 168.475 kb on - strandat 168.502 kb on + strandat 168.502 kb on + strandat 168.503 kb on - strandat 168.517 kb on + strandat 168.518 kb on - strandat 168.976 kb on + strandat 168.977 kb on - strandat 169.235 kb on + strand, within GFF2734at 169.235 kb on + strand, within GFF2734at 169.236 kb on - strand, within GFF2734at 169.236 kb on - strand, within GFF2734at 169.282 kb on + strand, within GFF2734at 169.282 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.351 kb on + strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734at 169.352 kb on - strand, within GFF2734

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
166,606 + GFF2731 0.15 +0.2
166,606 + GFF2731 0.15 -1.0
166,606 + GFF2731 0.15 -0.3
166,607 - GFF2731 0.15 +0.0
166,607 - GFF2731 0.15 +0.3
166,607 - GFF2731 0.15 +0.2
166,607 - GFF2731 0.15 +0.7
166,612 + GFF2731 0.15 -0.4
166,699 + GFF2731 0.23 -0.8
166,699 + GFF2731 0.23 -0.7
166,700 - GFF2731 0.23 +0.3
166,746 + GFF2731 0.27 -0.2
166,746 + GFF2731 0.27 +0.5
166,746 + GFF2731 0.27 +0.0
166,747 - GFF2731 0.27 -1.0
166,747 - GFF2731 0.27 +1.7
166,747 - GFF2731 0.27 -0.5
166,774 + GFF2731 0.30 -0.9
166,774 + GFF2731 0.30 -0.1
166,774 + GFF2731 0.30 +0.0
166,774 + GFF2731 0.30 +0.0
166,774 + GFF2731 0.30 -1.8
166,775 - GFF2731 0.30 +0.0
166,775 - GFF2731 0.30 -0.3
166,798 + GFF2731 0.32 +0.0
166,798 + GFF2731 0.32 -0.1
166,798 + GFF2731 0.32 +1.2
166,798 + GFF2731 0.32 -0.2
166,798 + GFF2731 0.32 +1.0
166,799 - GFF2731 0.32 +1.0
166,799 - GFF2731 0.32 +1.2
166,799 - GFF2731 0.32 -0.5
166,799 - GFF2731 0.32 +0.0
166,844 + GFF2731 0.36 -0.4
166,921 + GFF2731 0.43 +0.4
166,921 + GFF2731 0.43 -0.1
166,921 + GFF2731 0.43 -1.3
166,922 - GFF2731 0.43 -0.1
166,922 - GFF2731 0.43 -0.3
166,922 - GFF2731 0.43 -0.1
166,922 - GFF2731 0.43 +1.2
166,922 - GFF2731 0.43 +0.7
166,922 - GFF2731 0.43 +0.1
167,074 + GFF2731 0.56 +0.0
167,074 + GFF2731 0.56 -2.5
167,075 - GFF2731 0.56 -1.0
167,075 - GFF2731 0.56 +0.2
167,075 - GFF2731 0.56 +0.7
167,075 - GFF2731 0.56 +0.6
167,075 - GFF2731 0.56 -0.5
167,075 - GFF2731 0.56 +0.5
167,075 - GFF2731 0.56 +0.5
167,075 - GFF2731 0.56 -0.5
167,080 + GFF2731 0.57 -1.3
167,080 + GFF2731 0.57 -1.1
167,080 + GFF2731 0.57 +1.3
167,080 + GFF2731 0.57 +0.9
167,080 + GFF2731 0.57 +0.6
167,080 + GFF2731 0.57 -0.1
167,080 + GFF2731 0.57 +1.2
167,080 + GFF2731 0.57 -0.2
167,080 + GFF2731 0.57 +0.5
167,081 - GFF2731 0.57 -0.4
167,081 - GFF2731 0.57 +1.4
167,081 - GFF2731 0.57 +0.2
167,081 - GFF2731 0.57 -0.1
167,081 - GFF2731 0.57 -0.0
167,081 - GFF2731 0.57 +0.2
167,131 + GFF2731 0.61 -0.3
167,131 + GFF2731 0.61 +1.4
167,131 + GFF2731 0.61 +0.5
167,131 + GFF2731 0.61 -1.4
167,131 + GFF2731 0.61 +0.2
167,132 - GFF2731 0.61 +0.0
167,132 - GFF2731 0.61 -0.9
167,132 - GFF2731 0.61 -0.1
167,221 + GFF2731 0.69 -0.9
167,221 + GFF2731 0.69 -0.3
167,221 + GFF2731 0.69 -1.2
167,221 + GFF2731 0.69 -0.3
167,221 + GFF2731 0.69 +1.6
167,221 + GFF2731 0.69 +1.5
167,222 - GFF2731 0.69 +0.5
167,222 - GFF2731 0.69 +0.1
167,222 - GFF2731 0.69 -0.5
167,222 - GFF2731 0.69 +0.2
167,222 - GFF2731 0.69 -0.7
167,222 - GFF2731 0.69 +1.4
167,222 - GFF2731 0.69 -0.1
167,222 - GFF2731 0.69 -1.4
167,222 - GFF2731 0.69 +0.5
167,222 - GFF2731 0.69 -1.0
167,222 - GFF2731 0.69 +0.3
167,222 - GFF2731 0.69 +0.7
167,222 - GFF2731 0.69 +0.0
167,222 - GFF2731 0.69 -1.2
167,234 - GFF2731 0.70 +0.3
167,234 - GFF2731 0.70 -0.1
167,234 - GFF2731 0.70 -1.0
167,234 - GFF2731 0.70 -0.1
167,234 - GFF2731 0.70 -0.1
167,234 - GFF2731 0.70 -1.0
167,447 - GFF2731 0.89 +0.7
167,447 - GFF2731 0.89 +0.9
167,799 + GFF2732 0.24 -1.0
167,799 + GFF2732 0.24 +0.9
167,799 + GFF2732 0.24 -0.8
167,799 + GFF2732 0.24 -0.3
167,799 + GFF2732 0.24 -0.2
167,799 + GFF2732 0.24 -0.5
167,800 - GFF2732 0.24 +0.5
167,800 - GFF2732 0.24 +0.1
167,800 - GFF2732 0.24 +0.4
167,805 + GFF2732 0.25 -1.1
167,805 + GFF2732 0.25 -0.1
167,805 + GFF2732 0.25 +0.3
167,805 + GFF2732 0.25 -1.0
167,805 + GFF2732 0.25 +1.6
167,805 + GFF2732 0.25 +0.6
167,805 + GFF2732 0.25 +0.5
167,805 + GFF2732 0.25 -0.4
167,805 + GFF2732 0.25 +0.7
167,806 - GFF2732 0.25 +0.2
167,806 - GFF2732 0.25 +0.1
167,806 - GFF2732 0.25 -0.1
167,806 - GFF2732 0.25 -1.8
167,806 - GFF2732 0.25 +0.4
167,829 + GFF2732 0.28 +0.4
167,829 + GFF2732 0.28 +0.2
167,829 + GFF2732 0.28 -1.6
167,829 + GFF2732 0.28 +0.8
167,829 + GFF2732 0.28 +0.6
167,829 + GFF2732 0.28 +0.1
167,829 + GFF2732 0.28 -0.5
167,830 - GFF2732 0.28 +0.6
167,830 - GFF2732 0.28 +1.1
167,830 - GFF2732 0.28 +1.9
167,830 - GFF2732 0.28 -0.5
167,830 - GFF2732 0.28 +0.2
167,830 - GFF2732 0.28 +0.8
167,830 - GFF2732 0.28 -1.1
167,847 + GFF2732 0.30 +0.1
167,847 + GFF2732 0.30 -1.3
167,847 + GFF2732 0.30 -1.9
167,847 + GFF2732 0.30 -0.5
167,847 + GFF2732 0.30 +0.2
167,848 - GFF2732 0.30 -1.3
167,848 - GFF2732 0.30 -0.9
167,898 + GFF2732 0.35 -0.9
167,898 + GFF2732 0.35 +0.2
167,899 - GFF2732 0.35 +2.5
167,899 - GFF2732 0.35 -0.5
167,899 - GFF2732 0.35 +1.1
167,899 - GFF2732 0.35 -0.7
167,955 + GFF2732 0.42 +0.1
167,955 + GFF2732 0.42 -0.0
167,972 + GFF2732 0.44 -0.6
167,972 + GFF2732 0.44 +1.6
167,972 + GFF2732 0.44 +0.3
167,973 - GFF2732 0.44 -0.0
167,973 - GFF2732 0.44 -0.3
167,973 - GFF2732 0.44 +0.4
168,147 + GFF2732 0.63 +3.1
168,147 + GFF2732 0.63 +0.5
168,147 + GFF2732 0.63 +1.1
168,147 + GFF2732 0.63 +0.1
168,148 - GFF2732 0.63 -0.7
168,201 + GFF2732 0.69 -0.4
168,201 + GFF2732 0.69 -0.3
168,202 - GFF2732 0.69 +0.5
168,202 - GFF2732 0.69 +0.5
168,343 - GFF2732 0.85 +0.4
168,396 + +0.1
168,396 + +1.1
168,396 + -0.1
168,397 - +0.1
168,397 - -0.5
168,402 + +0.1
168,402 + -0.3
168,402 + +1.5
168,402 + -0.3
168,402 + -1.4
168,402 + +0.6
168,402 + -0.6
168,402 + -0.3
168,403 - -0.0
168,403 - +1.1
168,403 - +0.5
168,403 - +0.9
168,403 - -0.1
168,403 - +0.1
168,403 - -0.3
168,403 - -0.6
168,403 - +1.1
168,403 - -0.4
168,474 + +1.1
168,474 + +0.2
168,475 - -0.8
168,475 - +0.5
168,475 - -0.3
168,502 + -1.2
168,502 + -0.0
168,503 - -1.3
168,517 + -0.4
168,518 - -0.1
168,976 + -0.6
168,977 - -0.6
169,235 + GFF2734 0.12 -0.6
169,235 + GFF2734 0.12 -0.4
169,236 - GFF2734 0.12 +0.5
169,236 - GFF2734 0.12 +1.1
169,282 + GFF2734 0.15 -0.5
169,282 + GFF2734 0.15 -0.3
169,351 + GFF2734 0.18 -0.3
169,351 + GFF2734 0.18 -0.4
169,351 + GFF2734 0.18 -0.1
169,351 + GFF2734 0.18 +1.1
169,351 + GFF2734 0.18 -0.1
169,351 + GFF2734 0.18 +0.5
169,351 + GFF2734 0.18 -0.8
169,351 + GFF2734 0.18 -0.5
169,352 - GFF2734 0.18 +1.3
169,352 - GFF2734 0.18 -0.3
169,352 - GFF2734 0.18 -0.3
169,352 - GFF2734 0.18 -0.3
169,352 - GFF2734 0.18 +0.5
169,352 - GFF2734 0.18 +0.5
169,352 - GFF2734 0.18 -1.5
169,352 - GFF2734 0.18 -0.9

Or see this region's nucleotide sequence